View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_low_9 (Length: 377)
Name: NF14382_low_9
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_low_9 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 1823 - 1473
Alignment:
| Q |
19 |
aagtcgggtgttggtttggttttaggtgttccagctatatacaacgatccctttctttgtatctccatctggcaagctctgggcgtcttcagttttggta |
118 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1823 |
aagtcgggtgttggtttgattttaggtgttccacctatatacaacgatccctttctttgtatctccatctggcaagctctgagcgtcttcagttttggta |
1724 |
T |
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| Q |
119 |
ctatatatccataagttcagcattggcgaatgccatattttttgatttcatgtcaaatcctcaaagttttcgtagctagtttagtgaattacaattttgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1723 |
ctatatatccataagttcagcattggcgaatgccatattatttgatttcatgtcaaatcctcaaagttttcgtagctagtttagtgaattacaattttgt |
1624 |
T |
|
| Q |
219 |
gtccttgtaaataacataactactctatatccataagttcagcactggttaatctttcttttccactgcattgcatacatacacaagtttatctaatgca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1623 |
gtccttgtaaataacataactactctatatccataagttcaacactggttaatctttcttttccactgcattacatacatacacaagtttatctaatgca |
1524 |
T |
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| Q |
319 |
tataattaggatttcagaactatttaaccatttacacctcctctctctgct |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1523 |
tataattaggatttcagaactatttaaccatttacacctcctctctttgct |
1473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 9783 - 9433
Alignment:
| Q |
19 |
aagtcgggtgttggtttggttttaggtgttccagctatatacaacgatccctttctttgtatctccatctggcaagctctgggcgtcttcagttttggta |
118 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9783 |
aagtcgggtgttggtttgattttaggtgttccacctatatacaacgatccctttctttgtatctccatctggcaagctctgagcgtcttcagttttggta |
9684 |
T |
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| Q |
119 |
ctatatatccataagttcagcattggcgaatgccatattttttgatttcatgtcaaatcctcaaagttttcgtagctagtttagtgaattacaattttgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9683 |
ctatatatccataagttcagcattggcgaatgccatattatttgatttcatgtcaaatcctcaaagttttcgtagctagtttagtgaattacaattttgt |
9584 |
T |
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| Q |
219 |
gtccttgtaaataacataactactctatatccataagttcagcactggttaatctttcttttccactgcattgcatacatacacaagtttatctaatgca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9583 |
gtccttgtaaataacataactactctatatccataagttcaacactggttaatctttcttttccactgcattacatacatacacaagtttatctaatgca |
9484 |
T |
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| Q |
319 |
tataattaggatttcagaactatttaaccatttacacctcctctctctgct |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9483 |
tataattaggatttcagaactatttaaccatttacacctcctctctttgct |
9433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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