View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14383_high_1 (Length: 377)
Name: NF14383_high_1
Description: NF14383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14383_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 48603049 - 48602706
Alignment:
| Q |
10 |
tatactatgcatcaatcctctctacacatgaaatcccgtatatggatcaaacactatggtacctatatagatagagttgacttctatctatgtcatttcg |
109 |
Q |
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| T |
48603049 |
tatactatgcatcaatcctctctacacatgaaatcccgtatatggatcaaacactatggtgcgtatatagatagagttgacttctatctatgtcatttcg |
48602950 |
T |
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| Q |
110 |
agctactttatttgatgcatccgcttcataccaaatcaagaggataaacctttcatctaatcgtcaaagttagggaactccgcccataactaaatatgat |
209 |
Q |
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| T |
48602949 |
agctactttattcgatgcatccgcttcataccaaatcaagaggataaacctt-catctaatcgtcaaagttagggaaatccgcccataactaaatatgat |
48602851 |
T |
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| Q |
210 |
gcaaagctcagggatgcgaataggtttaacaccaaggtacgacctaggagtttccagggaggagatatttagtcttacaaaaagactcatgaagcaagga |
309 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48602850 |
gcaaagctcggggatgcgaataggtttaacaccaaggtacgacctaggagtttccagggaggagatatttagtcttacaaaaagactcatgatgcaagga |
48602751 |
T |
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| Q |
310 |
aaactaccagcgggtcaattgataagtttaatatgtatgtatcgt |
354 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
48602750 |
aaaccaccagcgggtcaattgataagtttaatatctatgtatcgt |
48602706 |
T |
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