View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14383_low_3 (Length: 315)
Name: NF14383_low_3
Description: NF14383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14383_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 950542 - 950758
Alignment:
| Q |
61 |
ataaatagtaaacaatataaactaactcagatcaatctatacccaagtgtttccgttgcttgcagtactgcattacgatagctggtgttgatatgtcatg |
160 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||| ||||| |||||||| |
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| T |
950542 |
ataaataataaacaatataaactaactcagatcaatctacactcaagtatttccgttgcttgcagtactgcattaagatagatggcgttgacatgtcatg |
950641 |
T |
|
| Q |
161 |
gccctccatatactgcaagaacttatcagcgtaattaccccacaaagaacaatgaactcgatgatttctgtggaatgtaaacaacatatcagtaaatgaa |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
950642 |
gccctccatatactgcaagaacttatcagcgtaattaccccacaaggagcaatgaactcgacgatttctgtggaatgtaaacaacatatcagtaaatgaa |
950741 |
T |
|
| Q |
261 |
gatgattatgctatatg |
277 |
Q |
| |
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||||||||||||||||| |
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| T |
950742 |
gatgattatgctatatg |
950758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 14173099 - 14173318
Alignment:
| Q |
61 |
ataaatagtaaacaatataaactaactcagatcaatctatacccaagtgtttccgttgcttgcagtactgcattacgatagctggtgttgatatgtcatg |
160 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||| ||||||||| ||||| |||||||| |
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| T |
14173099 |
ataaataataaataatataaactaactcagatcaatctatactcaaatattttcgttgcttgcagtactgcattaagatagctggcgttgacatgtcatg |
14173198 |
T |
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| Q |
161 |
gccctccatatactgcaagaacttatcagcgtaattaccccacaaagaacaatgaactcgatgatttctgtggaa---tgtaaacaacatatcagtaaat |
257 |
Q |
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| T |
14173199 |
gccctccatatactgcaagaacttatcaacgtaattaccccacaaagaacaatgaactcgacgatttctgtggaatgttgtaaacaacatatcagtaaat |
14173298 |
T |
|
| Q |
258 |
gaagatgattatgctatatg |
277 |
Q |
| |
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|||||||||||||||||||| |
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| T |
14173299 |
gaagatgattatgctatatg |
14173318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 7574797 - 7575016
Alignment:
| Q |
61 |
ataaatagtaaacaatataaactaactcagatcaatctatacccaagtgtttccgttgcttgcagtactgcattacgatagctggtgttgatatgtcatg |
160 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
7574797 |
ataaatattaaacaatataaactaactcagatcaatctatacccacgtaattctgttgcttgcagtactgcattaagatagctggcgttgacatgtcata |
7574896 |
T |
|
| Q |
161 |
gccctccatatactgcaagaacttatcagcgtaattaccccacaaagaacaatgaactcgatgatttctgtggaatgtaaacaacat---atcagtaaat |
257 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| |||||||||| |
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| T |
7574897 |
gccctccatatactgcaagaacttatcagtgtaattaccccacaaagaacaatgaaattgacgatttctgtggaatgtaaacagcatatgatcagtaaat |
7574996 |
T |
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| Q |
258 |
gaagatgattatgctatatg |
277 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7574997 |
gaagatgattatgctatatg |
7575016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 259257 - 259130
Alignment:
| Q |
61 |
ataaatagtaaacaatataaactaactcagatcaatctatacccaagtgtttccgttgcttgcagtactgcattacgatagctggtgttgatatgtcatg |
160 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
259257 |
ataaataataaacaatataaactaactcagatcaatctatatccaagtattttcgttgcttgcagtactgcattaagatagctggcattgacatgtcatg |
259158 |
T |
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| Q |
161 |
gccctccatatactgcaagaacttatca |
188 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
259157 |
gccctccatatacggcaagaacttatca |
259130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 40724396 - 40724270
Alignment:
| Q |
61 |
ataaatagtaaacaatataaactaactcagatcaatctatacccaagtgtttccgttgcttgcagtactgcattacgatagctggtgttgatatgtcatg |
160 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||||| |||||||| |
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| T |
40724396 |
ataaataataaacaatataaactaactcagatcaatctatacccaagtatttccgttgcttgca-tactgcattaagatagttggcgttgacatgtcatg |
40724298 |
T |
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| Q |
161 |
gccctccatatactgcaagaacttatca |
188 |
Q |
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|||| ||||||||||| ||||||||| |
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| T |
40724297 |
gcccattatatactgcaataacttatca |
40724270 |
T |
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