View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14384_high_1 (Length: 340)
Name: NF14384_high_1
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14384_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 3350949 - 3351218
Alignment:
| Q |
13 |
aaggcttgacatggcttaaaaaatgagtttttcttacctaattattgatgatttgaaggtgttagttgatatgattactaaaaattattatttatatttg |
112 |
Q |
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| T |
3350949 |
aaggcttgacatggcttaaaaaatgagtttttcttacctaattattgatgatttgaaggtgtttgttgatatgattactaacaattattatttatatttg |
3351048 |
T |
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| Q |
113 |
gcttaaagtggtggatatnnnnnnnnnn-tccatcaannnnnnnnn--gaaagctggtggatatcaaattttatataacttttatctaacaaactccaat |
209 |
Q |
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| T |
3351049 |
gcttaaagtggtggatataaaaaaaaaaatccatcaatttttttttttgaaagctggtggatatcaaattttatataacttttatctaacaaactccaat |
3351148 |
T |
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| Q |
210 |
gaaaatttagttctgatcataagtatttcccgacggtcttgaatcaaagaactaaaacagaattcgtaat |
279 |
Q |
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| T |
3351149 |
gaaaatttagttctgaacataagtatttcccgacggtctttaatcaaagaactaaaacagaattcgtaat |
3351218 |
T |
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