View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14384_high_2 (Length: 253)
Name: NF14384_high_2
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14384_high_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 1654705 - 1654480
Alignment:
| Q |
16 |
ataaaaacgaagaggaactcaatcaacatgaaaaagaaagacaaaaaacgagtcaattatgaatcatctaggatgagttttgtttttgtgtcatcactgc |
115 |
Q |
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| T |
1654705 |
ataaaaacgaagaggaactcaatcatcacgaaaaagaaagacaaaaa-cgaatcaattatgaatcatctaggatgagttttgtttttgtgtcgtcattgc |
1654607 |
T |
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| Q |
116 |
acattgtatcgaagaaggtactgaaatttctaacttgtttggaggatttttcttcggttttctctcatcgattttgttgttgtcgggtttctttttctcc |
215 |
Q |
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| T |
1654606 |
gcattgtatcgaagaaggtactgaaatttctaacttgtttggaggatttttcttcggttttctctcatcgattttgttgttgtcgggtttctttttctcc |
1654507 |
T |
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| Q |
216 |
tcgttgtatttgttcttcttcgatagt |
242 |
Q |
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| T |
1654506 |
tcgttgtatttgttcttcttcgatagt |
1654480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 41143994 - 41144045
Alignment:
| Q |
121 |
gtatcgaagaaggtactgaaatttctaacttgtttggaggatttttcttcgg |
172 |
Q |
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| T |
41143994 |
gtatcgaagaagataatgaaatttctaacctgttttgaggatttttcttcgg |
41144045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 111317 - 111266
Alignment:
| Q |
121 |
gtatcgaagaaggtactgaaatttctaacttgtttggaggatttttcttcgg |
172 |
Q |
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| T |
111317 |
gtatcgaagaagataatgaaatttctaacctgttttgaggatttttcttcgg |
111266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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