View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14384_low_1 (Length: 461)
Name: NF14384_low_1
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14384_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 30551524 - 30551093
Alignment:
| Q |
19 |
agcgtcaattcgactaaagaattgcagcttaaaagagaatcggaaggaaggaaaactttatcagcatattgaatatgaagcttttgaactctcctttcta |
118 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30551524 |
agcgtcaaatcgactagagaattgcagcgaaaaagtgaatcggaaggaaggaaaactttatcagcatattgaatatgaagcttttgaactctcctttcta |
30551425 |
T |
|
| Q |
119 |
ggataaaggaaatccattcacttaacttagatgcatcatattcatgactagttaagcaaagagagaaactttggatgctcgagttagtgaaatgaataag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30551424 |
ggataaaggaaatccattcacttaacttagatgcatcatattgatggctagttaaggaaagagagaaactttggatgcttgagttagtgaaatgaataag |
30551325 |
T |
|
| Q |
219 |
cactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatgcatttccaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30551324 |
cactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatgcatttccaa |
30551225 |
T |
|
| Q |
319 |
acatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgtaacgtgctaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30551224 |
acatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgatcggaatgaaagacaggatctgactaagaatgctttcatgtaatgtgctaa |
30551125 |
T |
|
| Q |
419 |
tcaaatctctttctccttctgttgtttccctt |
450 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| |
|
|
| T |
30551124 |
tcatatctctttctccttctattgtttccctt |
30551093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 30560233 - 30559802
Alignment:
| Q |
19 |
agcgtcaattcgactaaa-gaattgcagcttaaaagagaatcggaaggaaggaaaactttatcagcatattgaatatgaagcttttgaactctcctttct |
117 |
Q |
| |
|
||||||||||||| |||| || |||||||| ||||| ||| |||| ||||||||||||||| |||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
30560233 |
agcgtcaattcgattaaaagatttgcagctaaaaagttaattagaagaaaggaaaactttatcggcatattgaatatgaagcttctgaattctcgtttct |
30560134 |
T |
|
| Q |
118 |
aggataaaggaaatccattcacttaa--cttagatgcatcatattcatgactagttaagcaaagagagaaactttggatgctcgagttagtgaaatgaat |
215 |
Q |
| |
|
| ||||||| ||||||||||||||| || ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
30560133 |
aagataaagcaaatccattcacttatttctgagatgtatcatatggatgactagttaagcaaagaaagaaactttggatgctcgagttagtgaagtgaat |
30560034 |
T |
|
| Q |
216 |
aagcactttttcaacaaaattcacaaactgttccttttgcatccttttctttctagaaccaagcaaactatcatcaaaatctagattggttatgcatttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||| | ||| |||||||| || || |
|
|
| T |
30560033 |
aagcactttttcaacaaaattcacaaactgttcctttttcatttttttcttcatagaaccaaacaaactatcatcaaactttagtctggttatggatgtc |
30559934 |
T |
|
| Q |
316 |
caaacatcaacccatcttcttgataagacgctagtgctaaccgcgtctacgattggaatgaaagacaggatctgactaagaatgctttcatgtaacgtgc |
415 |
Q |
| |
|
|| | |||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||| |||||||||||||||||| |||| |
|
|
| T |
30559933 |
gaatcttcaatccatcatcttgataagacgctagtgctaaccgtgtctacaattggaatgaaagataggatgtgaccaagaatgctttcatgtaaagtgc |
30559834 |
T |
|
| Q |
416 |
taatcaaatctctttctccttctgttgtttccc |
448 |
Q |
| |
|
||||| | |||||||||||| ||| |||||||| |
|
|
| T |
30559833 |
taatc-attctctttctcctactgatgtttccc |
30559802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University