View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14384_low_2 (Length: 411)
Name: NF14384_low_2
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14384_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 65 - 397
Target Start/End: Original strand, 32066811 - 32067140
Alignment:
| Q |
65 |
atatgtagattttaccgagaactctcctccctcctccggttttcaccccatgaatcttccaccaccctccctctaaacccatttatagtggcctaaaggc |
164 |
Q |
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| T |
32066811 |
atatgtagattttaccgagaactctcctccctcctccggttttcaccccacgaatcttccaccaccctccctctaaacccatttatagtggccaaaaggt |
32066910 |
T |
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| Q |
165 |
tatcaatttgctccccctcccacacaaacggtaatcttctccaaagagtagtctctacgcaccccctcccaatcaatggtatgtaatcattatattttat |
264 |
Q |
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| T |
32066911 |
tttcaatttgctccccctcccacacaaacggtaatcttctccaaagagt---ctcgacacaccccctcccaatcaatggtatgtaatcattatattttat |
32067007 |
T |
|
| Q |
265 |
gttctctatttaatctcttcaaaatagtaaagtttaatatagaatttaaagttgatttggagggccttgaaatgttgtcacatttattttatttttacac |
364 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32067008 |
gttctctatttaatcttttcaaaatagtaaagtttaatatagaatttaaagttgatttggagggccttgaaatgttgtcacatttattttatttttacaa |
32067107 |
T |
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| Q |
365 |
gattgtgtgaggatcaattcgatagtgcgtaat |
397 |
Q |
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| T |
32067108 |
tattgtgtggggatcaattcgagagtgcgtaat |
32067140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 37987303 - 37987348
Alignment:
| Q |
6 |
catcatcacccccaccacacaaaccaacaccacggtttaccagaca |
51 |
Q |
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| T |
37987303 |
catcatctcccccaccacacaaaccaacaccacggttcagcagaca |
37987348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 697999 - 697953
Alignment:
| Q |
5 |
acatcatcacccccaccacacaaaccaacaccacggtttaccagaca |
51 |
Q |
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| T |
697999 |
acatcatcacccccaccacactaaccaacaccacggtttagcagaca |
697953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 10243825 - 10243788
Alignment:
| Q |
5 |
acatcatcacccccaccacacaaaccaacaccacggtt |
42 |
Q |
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| T |
10243825 |
acatcatcacccccaccacacaaaccaacaccacggtt |
10243788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 46693262 - 46693294
Alignment:
| Q |
5 |
acatcatcacccccaccacacaaaccaacacca |
37 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46693262 |
acatcatcacccccaccacacaaaccaacacca |
46693294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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