View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14384_low_3 (Length: 366)

Name: NF14384_low_3
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14384_low_3
NF14384_low_3
[»] chr6 (3 HSPs)
chr6 (74-355)||(15572272-15572548)
chr6 (307-356)||(20528167-20528216)
chr6 (305-356)||(3005228-3005279)
[»] chr8 (2 HSPs)
chr8 (305-356)||(22835959-22836010)
chr8 (307-356)||(3887727-3887776)
[»] chr7 (3 HSPs)
chr7 (305-356)||(5780485-5780536)
chr7 (307-356)||(7108109-7108158)
chr7 (240-356)||(47241419-47241531)
[»] chr3 (2 HSPs)
chr3 (305-356)||(30058329-30058380)
chr3 (305-356)||(29401058-29401109)
[»] chr5 (1 HSPs)
chr5 (305-356)||(11399907-11399958)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 74 - 355
Target Start/End: Original strand, 15572272 - 15572548
Alignment:
Q  74 tactcttattgtagttgcatgtgatagtacgataattggtcaannnnnnnncacaagagaggagttatatggagatgatttcatcaaacaaataaggtga 173  Q
    |||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15572272 tactcttattgtagttgcatgtgatagtacgataattgatcgttttttattcacaagagaggagttatatggagatgatttcatcaaacaaataaggtga 15572371  T
Q  174 ttaattagcaaagtagaaannnnnnnnnnnnnnnaaatgttgatgtataacattgggcacgttaggaaaaaataagagtgcttatacacggacacgcata 273  Q
    |||||||||||||||||||               |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||    
T  15572372 ttaattagcaaagtagaaa-aaacaatatttttaaaattttgatgtataacattgggcacgttaggaaaaaataggagtgcttatacacagacacgtata 15572470  T
Q  274 ggtggcatacatacacctcttaaannnnnnnacataaatgtaacatgtggcaatgcgggtccaaaatgactacatatccttt 355  Q
    |||||    |||||||| ||||||       ||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  15572471 ggtgg----catacaccccttaaacccccacacataaatgcaagatgtggcaatgtgggtccaaaatgactacatatccttt 15572548  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 20528216 - 20528167
Alignment:
Q  307 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  20528216 ataaatgtaacatgtggcaatgtgggtccaaaataactacttatcctttg 20528167  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 3005228 - 3005279
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||||| ||||||||| |||| ||||||||||| |||||||||| ||||    
T  3005228 acataaatgcaacatgtggaaatgtgggtccaaaataactacatatcatttg 3005279  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 22835959 - 22836010
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  22835959 acataaatgcaacatgtggcaaagtgggtccaaaataactacatatcctttg 22836010  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 3887727 - 3887776
Alignment:
Q  307 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||| ||||    
T  3887727 ataaatgcaacatgtggcaatgtgggtccaaaataactacttatcatttg 3887776  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 5780485 - 5780536
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  5780485 acataaatgtaacatgtggcaatatgggtccaaaataactatatatcctttg 5780536  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 7108109 - 7108158
Alignment:
Q  307 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||    
T  7108109 ataaatgcaacatgtggcaatgtgggtccaaaataactacttatcctttg 7108158  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 47241531 - 47241419
Alignment:
Q  240 aaaaaataagagtgcttatacacggacacgcataggtggcatacatacacctcttaaannnnnnnacataaatgtaacatgtggcaatgcgggtccaaaa 339  Q
    |||||| || ||||||||||||  ||||| |||||||||||||||    | |||||||       | ||||||| |||||||||||||| ||||||||||    
T  47241531 aaaaaaaaaaagtgcttatacatagacacacataggtggcataca----cttcttaaaccctcacatataaatgcaacatgtggcaatgtgggtccaaaa 47241436  T
Q  340 tgactacatatcctttg 356  Q
    | ||||| |||| ||||    
T  47241435 taactacttatcatttg 47241419  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 30058380 - 30058329
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||||||||||    
T  30058380 acataaatgcagcatgtggcaatgtgggtccaaaataactacatatcctttg 30058329  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 29401109 - 29401058
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||||| |||||||||||||  |||| |||||| |||||||||||||||    
T  29401109 acataaatgcaacatgtggcaatctgggttcaaaataactacatatcctttg 29401058  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 11399958 - 11399907
Alignment:
Q  305 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 356  Q
    ||||||||| ||||| |||||||| |||| |||||| |||||||||||||||    
T  11399958 acataaatgcaacatatggcaatgtgggttcaaaataactacatatcctttg 11399907  T

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