View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14384_low_7 (Length: 226)

Name: NF14384_low_7
Description: NF14384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14384_low_7
NF14384_low_7
[»] chr8 (10 HSPs)
chr8 (2-220)||(13152502-13152720)
chr8 (1-220)||(28846469-28846685)
chr8 (42-220)||(27190660-27190838)
chr8 (2-199)||(14446682-14446878)
chr8 (25-220)||(24333586-24333781)
chr8 (1-80)||(9256269-9256348)
chr8 (116-220)||(9256355-9256456)
chr8 (153-194)||(16532765-16532806)
chr8 (153-220)||(30791566-30791633)
chr8 (15-56)||(23449107-23449148)
[»] chr4 (9 HSPs)
chr4 (1-220)||(31944464-31944683)
chr4 (26-106)||(51379514-51379594)
chr4 (70-131)||(24104598-24104659)
chr4 (1-89)||(24104670-24104759)
chr4 (127-204)||(4325387-4325463)
chr4 (153-207)||(53693155-53693209)
chr4 (153-220)||(12211334-12211401)
chr4 (153-220)||(27364883-27364950)
chr4 (153-207)||(55464781-55464835)
[»] chr3 (7 HSPs)
chr3 (4-190)||(3857014-3857200)
chr3 (1-220)||(51261827-51262046)
chr3 (48-220)||(15667868-15668040)
chr3 (1-51)||(55194897-55194947)
chr3 (153-220)||(43137127-43137194)
chr3 (153-220)||(31989029-31989096)
chr3 (1-47)||(9741435-9741480)
[»] chr7 (13 HSPs)
chr7 (1-220)||(43727844-43728063)
chr7 (1-220)||(9230249-9230468)
chr7 (49-219)||(23179994-23180167)
chr7 (63-193)||(23804633-23804763)
chr7 (25-169)||(25024455-25024599)
chr7 (25-155)||(5287940-5288070)
chr7 (41-157)||(24276398-24276515)
chr7 (129-194)||(8638590-8638655)
chr7 (153-220)||(19399978-19400045)
chr7 (153-220)||(27387414-27387481)
chr7 (1-36)||(5287745-5287780)
chr7 (163-218)||(18375416-18375471)
chr7 (153-193)||(45197644-45197684)
[»] chr5 (7 HSPs)
chr5 (2-220)||(3055330-3055549)
chr5 (1-218)||(8785631-8785847)
chr5 (1-180)||(27168943-27169122)
chr5 (25-199)||(11852587-11852761)
chr5 (63-208)||(23244690-23244835)
chr5 (159-220)||(1280384-1280445)
chr5 (172-220)||(22541905-22541953)
[»] chr2 (3 HSPs)
chr2 (1-204)||(34317591-34317794)
chr2 (1-194)||(12539422-12539615)
chr2 (159-220)||(35649768-35649829)
[»] scaffold0178 (1 HSPs)
scaffold0178 (3-220)||(17590-17807)
[»] chr6 (7 HSPs)
chr6 (1-204)||(12180649-12180852)
chr6 (4-220)||(11970811-11971027)
chr6 (25-86)||(8035490-8035551)
chr6 (1-85)||(25340331-25340411)
chr6 (153-213)||(32442087-32442146)
chr6 (4-36)||(8035701-8035733)
chr6 (153-221)||(24074412-24074480)
[»] chr1 (12 HSPs)
chr1 (1-220)||(14498746-14498964)
chr1 (1-220)||(48606720-48606939)
chr1 (1-220)||(9636970-9637188)
chr1 (1-220)||(30559113-30559332)
chr1 (113-220)||(52753925-52754032)
chr1 (1-133)||(30054713-30054845)
chr1 (1-82)||(52754030-52754111)
chr1 (127-193)||(40864854-40864920)
chr1 (138-206)||(25017371-25017439)
chr1 (137-188)||(32379992-32380043)
chr1 (153-220)||(17127439-17127506)
chr1 (160-220)||(26273037-26273097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (66-194)||(435489-435617)
[»] scaffold0007 (1 HSPs)
scaffold0007 (153-220)||(259918-259985)
[»] scaffold0019 (1 HSPs)
scaffold0019 (153-220)||(134962-135029)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 13152720 - 13152502
Alignment:
Q  2 agattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccct 101  Q
    ||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |    
T  13152720 agattttaacttctaatttgtggatcttcaataatagagggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaagccat 13152621  T
Q  102 gtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatc 201  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  13152620 gtcaaaaagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatc 13152521  T
Q  202 gagcggatgatattcaagt 220  Q
    ||||||  |||||||||||    
T  13152520 gagcgggagatattcaagt 13152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28846469 - 28846685
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||||||||||||| ||||| |||| ||  ||| |||    
T  28846469 cagattttaacttctaatttgtggatcttcaacaatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccc 28846568  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||   ||||||    
T  28846569 tgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacat 28846665  T
Q  201 cgagcggatgatattcaagt 220  Q
    |||||||  |||||||||||    
T  28846666 cgagcgggagatattcaagt 28846685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 27190660 - 27190838
Alignment:
Q  42 gtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaa 141  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||| |||||||||||| ||||||||||||||| |||||    
T  27190660 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaa 27190759  T
Q  142 ataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    | ||||||||| |||| ||||||||||||||||||||||| |||||||||||| | || | |||||  |||||||||||    
T  27190760 agaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagt 27190838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 14446682 - 14446878
Alignment:
Q  2 agattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccct 101  Q
    ||||||||||||||||||||||||  |||||||| |   ||| |||||||||||||||||| ||||||||||||||||||||||||| |  ||||| |||    
T  14446682 agattttaacttctaatttgtggaatttcaacaatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaagtcct 14446781  T
Q  102 gtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtaca 199  Q
    |||||||||||||||||| ||||||||||| | | |||||| |||||||||| ||| |||||||||| |||||||||||| |||||||||||| ||||    
T  14446782 gtcaataagctagtaaaataatcttataagtctgcgagaaagaattgttacc-acaagatcaacgatttgtggttcaatgacttgatgatatgttaca 14446878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 24333586 - 24333781
Alignment:
Q  25 atcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatc 124  Q
    |||||| |||| ||| ||||||||||| |||||||||| ||||| ||||||||||||||||||  || ||||| | ||||||||||||||||||| ||||    
T  24333586 atcttcgacaatagcaggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaagtcttgtcaataagctagtaaaataatc 24333685  T
Q  125 ttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| || ||||||| ||| |||||||| ||||  ||||||  |||||||||||    
T  24333686 ttataagcccgtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagt 24333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9256269 - 9256348
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaa 80  Q
    ||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||    
T  9256269 cagattttaacttttaatttgtggatcttcaacgatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaa 9256348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 9256355 - 9256456
Alignment:
Q  116 aaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatatt 215  Q
    |||| |||||||||||| ||||||||| ||||   ||||| |||||||| ||||||||||| |||| |||||||||||| ||||||||||||  ||||||    
T  9256355 aaaataatcttataagcacgtgagaaagaatt---accaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatatt 9256451  T
Q  216 caagt 220  Q
    |||||    
T  9256452 caagt 9256456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 16532806 - 16532765
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatg 194  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatg 16532765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 30791633 - 30791566
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||  ||| ||||||||||| |||||||||||| |||| |||||||  |||||||||||    
T  30791633 caacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagt 30791566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 23449107 - 23449148
Alignment:
Q  15 taatttgtggatcttcaacaaaagctggtgcaccaaagctat 56  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||    
T  23449107 taatttgtggatctttaacaatagcgggtgcaccaaagctat 23449148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31944464 - 31944683
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  31944464 cagattttaacttctaatttgtggatcttcaacaatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagttatcaagccc 31944563  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    || |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||     
T  31944564 tgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacac 31944663  T
Q  201 cgagcggatgatattcaagt 220  Q
    |||| |   |||||||||||    
T  31944664 cgagtgtgagatattcaagt 31944683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 51379514 - 51379594
Alignment:
Q  26 tcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaa 106  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||| ||||    
T  51379514 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaagccctatcaa 51379594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 24104659 - 24104598
Alignment:
Q  70 aaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataag 131  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  24104659 aaaagttggaagtccaccagttatcaagctctgccaataagctagtaaaagaatcttataag 24104598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24104759 - 24104670
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctgg-tgcaccaaagctattaccaatatcaacaaaagttggaagtccaccat 89  Q
    |||||||||||||||||||||||||| | |||| | ||| || |||||||||||||| ||||| |||||||||||||| |||||||||||    
T  24104759 cagattttaacttctaatttgtggatatgcaacgatagcagggtgcaccaaagctatcaccaacatcaacaaaagttgaaagtccaccat 24104670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 4325387 - 4325463
Alignment:
Q  127 ataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgag 204  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||    
T  4325387 ataagcccgtaagaaagaat-gttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgag 4325463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 53693209 - 53693155
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcgg 207  Q
    |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgg 53693155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 12211401 - 12211334
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||| ||| | |  |||||||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagt 12211334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 27364883 - 27364950
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| |||||||  ||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  27364883 caacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagt 27364950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 55464835 - 55464781
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcgg 207  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||| |||||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgg 55464781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 3857200 - 3857014
Alignment:
Q  4 attttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgt 103  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  3857200 attttaacttctaatttttggatcttcaacaatagcaggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgt 3857101  T
Q  104 caataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatga 190  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||    
T  3857100 caataagctagtaaaataatcttataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatga 3857014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51261827 - 51262046
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||| || |||| |||    
T  51261827 cagatcttaacttctaatttgtggatcttcaacaatagcaggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccc 51261926  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| ||| | |||||| ||||| ||| |||||||||||||| ||||||||| ||||||| |||||  ||||||||||| ||||     
T  51261927 tgtcaataagctagtaaaataatataataagctcgtgaaaaagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgatatgttacac 51262026  T
Q  201 cgagcggatgatattcaagt 220  Q
      |||||| |||||||||||    
T  51262027 taagcggaagatattcaagt 51262046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 15667868 - 15668040
Alignment:
Q  48 caaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaaataatt 147  Q
    |||| |||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||| |||||||||| ||| ||||||| ||||    
T  15667868 caaacctattaccaacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaatt 15667967  T
Q  148 gttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    |||||||||| |||||| |||||||||||||||  |||||||||||| || | |||||||  |||||||||||    
T  15667968 gttaccaacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagt 15668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55194897 - 55194947
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaa 51  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  55194897 cagattttaacttctaatttgtggatcttcaacaatagcgggtgcaccaaa 55194947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 43137127 - 43137194
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| |||||||||||| |||||||||| |||||||||||| |||| |||||||  |||||||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagt 43137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 31989029 - 31989096
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagt 31989096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9741435 - 9741480
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcac 47  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  9741435 cagattttaactt-taatttgtggatcttcaacaatagcgggtgcac 9741480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43727844 - 43728063
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    |||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||  |     
T  43727844 cagactttaacttctaattcgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaactca 43727943  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  43727944 tgtcaataagctagtaaaataatcttataagcctatgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttatat 43728043  T
Q  201 cgagcggatgatattcaagt 220  Q
    ||| |||  |||||||||||    
T  43728044 cgaacgggagatattcaagt 43728063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9230249 - 9230468
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||| ||| |||||| ||| |||||||| ||| |||||||||||||||||| ||| ||||||||||||||||| | || || ||||||||||     
T  9230249 cagattttaacatcttatttgtcgatattcaacaatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcagttatcaagcca 9230348  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  9230349 tgtcaataagctagtaaaataatcttataagcccgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgatatgttacat 9230448  T
Q  201 cgagcggatgatattcaagt 220  Q
     ||||||  |||| ||||||    
T  9230449 agagcgggagatactcaagt 9230468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 23180167 - 23179994
Alignment:
Q  49 aaagctattaccaatatcaacaaaagttggaagtccaccat---ttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaaataa 145  Q
    |||||||||||||| ||||||||||||||||||| | |||    |||||||||  || |||||||||||||||| |||||||||||| ||||||||||||    
T  23180167 aaagctattaccaacatcaacaaaagttggaagtactccacgggttatcaagctttgccaataagctagtaaaataatcttataagctcgtgagaaataa 23180068  T
Q  146 ttgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaag 219  Q
    |||||||||||| ||||||||||||||| ||||||  |||||||||||| |||| ||||||   ||||||||||    
T  23180067 ttgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaag 23179994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 23804763 - 23804633
Alignment:
Q  63 tatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatc 162  Q
    |||||||||||||| ||||||| ||  || |||||| |||||||||||||||||||| |||||||||||   |||||||| ||| |||||||||| ||||    
T  23804763 tatcaacaaaagttagaagtccccccgttgtcaagctctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatc 23804664  T
Q  163 aacgatgtgtggttcaatgccttgatgatat 193  Q
    ||||||||||||||||||| |||| ||||||    
T  23804663 aacgatgtgtggttcaatgacttgttgatat 23804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 25024455 - 25024599
Alignment:
Q  25 atcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatc 124  Q
    ||||||||||| ||| | |||||||||||||||||||  ||||||||||||||||||||||||| || |||| || ||| ||||||||||||||| ||||    
T  25024455 atcttcaacaatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataagctagtaaaataatc 25024554  T
Q  125 ttataagcccgtgagaaataattgttaccaacatgatcaacgatg 169  Q
    ||||||||| | |||||  ||||||||| || |  ||||||||||    
T  25024555 ttataagccggcgagaaggaattgttactaataaaatcaacgatg 25024599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 5287940 - 5288070
Alignment:
Q  25 atcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatc 124  Q
    |||||||| || ||| |||| ||||||||||||||||  ||||||||||||||||||||||||  || ||||  ||||||||||||||||||||| ||||    
T  5287940 atcttcaaaaatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatc 5288039  T
Q  125 ttataagcccgtgagaaataattgttaccaa 155  Q
    ||| |||| ||||||||| || |||||||||    
T  5288040 ttacaagctcgtgagaaagaagtgttaccaa 5288070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 24276515 - 24276398
Alignment:
Q  41 ggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaag-ccctgtcaataagctagtaaaagaatcttataagcccgtgag 139  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||| | || ||||||||||||||||  |||||||||| | ||| ||    
T  24276515 ggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaaattaatcttataacctcgttag 24276416  T
Q  140 aaataattgttaccaaca 157  Q
    ||| ||||||||||||||    
T  24276415 aaagaattgttaccaaca 24276398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 8638590 - 8638655
Alignment:
Q  129 aagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatg 194  Q
    ||||||| |||||| |||||||||||||| ||||||||| |||||||| |||  ||||||||||||    
T  8638590 aagcccgcgagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgatatg 8638655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 19399978 - 19400045
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagt 19400045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 27387481 - 27387414
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagt 27387414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5287745 - 5287780
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaa 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5287745 cagattttaacttctaatttgtggatcttcagcaaa 5287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 18375416 - 18375471
Alignment:
Q  163 aacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaa 218  Q
    ||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaa 18375471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 45197644 - 45197684
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatat 193  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgatat 45197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 3055330 - 3055549
Alignment:
Q  2 agattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaa-gttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||| |||||||||  | | |||||  |||| ||||||||||     
T  3055330 agattttaacttctaatttatggatcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaattggtagaagtaaaccagttatcaagcca 3055429  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  3055430 tgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacat 3055529  T
Q  201 cgagcggatgatattcaagt 220  Q
    |||||||  |||||||||||    
T  3055530 cgagcgggagatattcaagt 3055549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8785631 - 8785847
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |||    
T  8785631 cagatttaaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactagttatcaaaccc 8785730  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
     || ||||||||||||||| ||||||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||||  |||||    
T  8785731 cgttaataagctagtaaaataatcttataag-caatgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgataatatattacat 8785829  T
Q  201 cgagcggatgatattcaa 218  Q
    | |||||  |||||||||    
T  8785830 caagcgggagatattcaa 8785847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 27169122 - 27168943
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||| |||||||| || ||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |     
T  27169122 cagattttaacttctaatttgtgaatcttcaataatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaagtct 27169023  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaat 180  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  27169022 tgtcaataagctagtaaaataatcttataagcccatgagaaataattgttacaaacaagatcaacgatgtgtggttcaat 27168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 11852587 - 11852761
Alignment:
Q  25 atcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatc 124  Q
    ||||||||||| ||  ||||||||||| ||||||| || ||||||||||||   || |||| || || ||||| ||||||||||||||||||||| ||||    
T  11852587 atcttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaataagctagtaaaataatc 11852686  T
Q  125 ttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtaca 199  Q
    ||||||| |||||||||| |||| ||||||||| ||| || |||||||||||||||| |||||||||||| ||||    
T  11852687 ttataagtccgtgagaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttaca 11852761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 23244835 - 23244690
Alignment:
Q  63 tatcaacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatc 162  Q
    |||||||||||||||||| ||||    || ||||||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||||| ||||    
T  23244835 tatcaacaaaagttggaattccattcgttgtcaagccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatc 23244736  T
Q  163 aacgatgtgtggttcaatgccttgatgatatggtacatcgagcgga 208  Q
    |||||||||| |||||||| |||||||||||| ||  |||||||||    
T  23244735 aacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcgga 23244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 1280384 - 1280445
Alignment:
Q  159 gatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||||| |||||||||||||||  ||||||||||| |||| |||||||  |||||||||||    
T  1280384 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagt 1280445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 22541905 - 22541953
Alignment:
Q  172 tggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| |||| |||||||||||| |||||||| |||| |||||||||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagt 22541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34317794 - 34317591
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||      
T  34317794 cagattttaacttctaatttgtggatcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagctt 34317695  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||||||||||||||  || ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||     
T  34317694 tgtcaataagctagtaaaagaatcttataaatccatgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgatatgttacac 34317595  T
Q  201 cgag 204  Q
    ||||    
T  34317594 cgag 34317591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 12539422 - 12539615
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||| |||||||||| |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||     
T  12539422 cagattttatcttctaatttttggatctttaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagcct 12539521  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatg 194  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| ||||||||||||    
T  12539522 tgccaataagctagtaaaagaatcttataagcccgtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgatatg 12539615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 35649829 - 35649768
Alignment:
Q  159 gatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    |||||||||||||| |||||||| |||||||||||| |||| |||||||  |||||||||||    
T  35649829 gatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagt 35649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 17590 - 17807
Alignment:
Q  3 gattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctg 102  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| | |||    
T  17590 gattttagcttctaatttgtggatcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctg 17689  T
Q  103 tcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcg 202  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| | |||||||    
T  17690 tcaataagctagtaaaataatcttataagctcattagaaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcg 17789  T
Q  203 agcggatgatattcaagt 220  Q
    |||||  |||||| ||||    
T  17790 agcgggagatatttaagt 17807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 12180852 - 12180649
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||| || |||||||||||||| ||||||| || |||||||||||    
T  12180852 cagattttaacttctaatttgtggatcttcaacaatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaagtccatcagttatcaagccc 12180753  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||  |||||||||||||| |||||||||||| ||||     
T  12180752 tgtcaataagctggtaaaataatcttataagcccgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgatatgttacac 12180653  T
Q  201 cgag 204  Q
    ||||    
T  12180652 cgag 12180649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 11970811 - 11971027
Alignment:
Q  4 attttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccctgt 103  Q
    ||||||| ||||||||| | ||||||||| || ||| |||||| ||||||||||||||| |||| |||||||  ||||||||| | || |||| |||  |    
T  11970811 attttaatttctaatttctagatcttcaaaaatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaaaccccat 11970910  T
Q  104 caataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcga 203  Q
    | |||| ||||||||| ||| |||||||   |||||||| |||||||||||| | ||||||||||||||||||||||| |||||| ||||| |||| |||    
T  11970911 ctataatctagtaaaataattttataagtatgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccga 11971010  T
Q  204 gcggatgatattcaagt 220  Q
    ||||| |||||||||||    
T  11971011 gcggaagatattcaagt 11971027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 8035551 - 8035490
Alignment:
Q  25 atcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccac 86  Q
    ||||||||||  ||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  8035551 atcttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccac 8035490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25340331 - 25340411
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtcca 85  Q
    ||||||||||||||||||| |||||||||||||||     ||| |||||||| ||||||||| |||||||||||||| |||||||    
T  25340331 cagattttaacttctaattcgtggatcttcaacaag----ggttcaccaaagttattaccaacatcaacaaaagttgaaagtcca 25340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 32442146 - 32442087
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgata 213  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||| ||||    
T  32442146 caacatgattaacgatgtgtggttcaatgactt-atgatatgttacatcgagcggaagata 32442087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 8035733 - 8035701
Alignment:
Q  4 attttaacttctaatttgtggatcttcaacaaa 36  Q
    |||||||||||||||||||||||||||||||||    
T  8035733 attttaacttctaatttgtggatcttcaacaaa 8035701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 24074412 - 24074480
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagtt 221  Q
    ||||| ||||||| |||||||||  |||| |||||||||||| |||| |||| ||  ||||||||||||    
T  24074412 caacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagtt 24074480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14498746 - 14498964
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||| ||| ||||||||||||||||||| ||||| | ||||||||     
T  14498746 cagattttaacttttaatttgtggatcttcaacaatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagtcatcaagcca 14498845  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| ||||| |||||| |||||||||||  |||||    
T  14498846 tgtcaataagctagtaaaataatcttataagctcgtgagaaagatttgttaccaacatgatcaacgatttgtgg-tcaatgacttgatgatatcttacat 14498944  T
Q  201 cgagcggatgatattcaagt 220  Q
    |||||||  |||||||||||    
T  14498945 cgagcgggagatattcaagt 14498964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48606939 - 48606720
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |||    
T  48606939 cagattttaacttctaatttgtggatcttcaacaatagcaagtgcaccaaagctattaccaaaatcaacaaaagttggaagtccactagttatcaaaccc 48606840  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||  ||||||||| ||||||||| |  |||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||     
T  48606839 tgtcaatattctagtaaaataatcttatatgttcgtgggaaagaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacac 48606740  T
Q  201 cgagcggatgatattcaagt 220  Q
    |||||||  |||||||||||    
T  48606739 cgagcgggagatattcaagt 48606720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9636970 - 9637188
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||| || |||||||||||||| |||||||||  |||| ||||||    
T  9636970 cagattttaacttctaatttttggatcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggttataaagccc 9637069  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    || |||||||||||| ||| |||||||||||  |||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||| ||||     
T  9637070 tgccaataagctagt-aaataatcttataagttcgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgatatgttacac 9637168  T
Q  201 cgagcggatgatattcaagt 220  Q
    ||||||| ||||||||||||    
T  9637169 cgagcgggtgatattcaagt 9637188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30559332 - 30559113
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||  || ||||||      
T  30559332 cagattttaacttataatttgtggatcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaagctt 30559233  T
Q  101 tgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacat 200  Q
    ||||||||||||||||||| | |||||||||| || |||||| |||||||| ||||| ||||||||||||||||||| ||| |||||||||||| ||||     
T  30559232 tgtcaataagctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacac 30559133  T
Q  201 cgagcggatgatattcaagt 220  Q
    ||||||   |||||||||||    
T  30559132 cgagcgagagatattcaagt 30559113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 52754032 - 52753925
Alignment:
Q  113 agtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgat 212  Q
    ||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||  |||    
T  52754032 agtaaaataatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagat 52753933  T
Q  213 attcaagt 220  Q
    ||||||||    
T  52753932 attcaagt 52753925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 30054713 - 30054845
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagtccaccatttatcaagccc 100  Q
    |||||||||| ||||||||| |||||||||||||| ||| ||||||  ||| | |||||||| ||||||||||||||||||||||||  || ||||||||    
T  30054713 cagattttaatttctaatttatggatcttcaacaatagcgggtgcattaaaaccattaccaacatcaacaaaagttggaagtccaccggttgtcaagccc 30054812  T
Q  101 tgtcaataagctagtaaaagaatcttataagcc 133  Q
    |  |||||||||||||||| ||||||| |||||    
T  30054813 taccaataagctagtaaaataatcttacaagcc 30054845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 52754111 - 52754030
Alignment:
Q  1 cagattttaacttctaatttgtggatcttcaacaaaagctggtgcaccaaagctattaccaatatcaacaaaagttggaagt 82  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| || ||||||||||| ||||    
T  52754111 cagattttaacttctaatttgtggatcttcaacaatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt 52754030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 40864920 - 40864854
Alignment:
Q  127 ataagcccgtgagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatat 193  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  40864920 ataagctcgtaagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatat 40864854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 25017371 - 25017439
Alignment:
Q  138 agaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcg 206  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||  |||| ||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcg 25017439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 32380043 - 32379992
Alignment:
Q  137 gagaaataattgttaccaacatgatcaacgatgtgtggttcaatgccttgat 188  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 32379992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 17127439 - 17127506
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagt 17127506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 26273097 - 26273037
Alignment:
Q  160 atcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||||||||||| ||||||||  ||||||||||| |||||||||| |  |||||||||||    
T  26273097 atcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagt 26273037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 435617 - 435489
Alignment:
Q  66 caacaaaagttggaagtccaccatttatcaagccctgtcaataagctagtaaaagaatcttataagcccgtgagaaataattgttaccaacatgatcaac 165  Q
    ||||||||||| ||||||||||| || |||| || |||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||| ||||||     
T  435617 caacaaaagttcgaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaat 435518  T
Q  166 gatgtgtggttcaatgccttgatgatatg 194  Q
     |||||||| |||||| ||||||||||||    
T  435517 aatgtgtggctcaatgacttgatgatatg 435489  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 259918 - 259985
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||||   ||||||||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagt 259985  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 135029 - 134962
Alignment:
Q  153 caacatgatcaacgatgtgtggttcaatgccttgatgatatggtacatcgagcggatgatattcaagt 220  Q
    ||||| ||| ||| |||||||||| |||| |||||||||||| |||| |||||||  |||||||||||    
T  135029 caacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagt 134962  T

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