View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14385_low_1 (Length: 342)
Name: NF14385_low_1
Description: NF14385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14385_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 54862433 - 54862113
Alignment:
| Q |
19 |
aaaatgactaacaacaattttgtcaccggagaatagaaagtcttaatgtgtatactggttgtagttgtaaacaagtcaagctacttgacaaaagtctgag |
118 |
Q |
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| T |
54862433 |
aaaacgactaacaacaattttgtcaccggagaatagaaagtcttaatgtgtatactggttgtagttgtaaacaagtcaagctacttgacaaaagtctgag |
54862334 |
T |
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| Q |
119 |
tatgaacaaggacccgatgaggatatatggagaatctacatcacaaaatgattgcagataacaaaaagaaacacatccttcactacctagggaaacagtg |
218 |
Q |
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| T |
54862333 |
tatgaacaaggacccgatgaggatatatggagaatctacatcacaaaataattacagataacaaaaagaaacacatcctccactacctagggaaacagtg |
54862234 |
T |
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| Q |
219 |
atgattactccaaccattgacaaactttcagaccattgtcaagagtttattctgctcctaccaaggatttgaaaaactagggtcccatccattatatatc |
318 |
Q |
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| T |
54862233 |
atgattactccaaccattgacaaactttcagaccattgtc-agagtttattctgctcctaccaaggatttgaaaaaccagagtcccgtccattatatatc |
54862135 |
T |
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| Q |
319 |
taatacaccatcactttcatct |
340 |
Q |
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| T |
54862134 |
taatacaccatcactttcatct |
54862113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 54857537 - 54857374
Alignment:
| Q |
86 |
taaacaagtcaagctacttgacaaaagtctgagtatgaacaaggacccgatgagga-tatatggagaatctacatcac---aaaatgattgcagataaca |
181 |
Q |
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| T |
54857537 |
taaataagtcaagctaattcacaaaagtctgagtatgaacaaggacccgatggggattagatggagaaactacatcacataataataattacatataa-t |
54857439 |
T |
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| Q |
182 |
aaaagaaacacatccttcactacctagggaaacagtgatgattactccaaccattgacaaacttt |
246 |
Q |
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| T |
54857438 |
aaaagaaacacatcctccacttccaagggaaactgggatggatactcaaaccatcgacaaacttt |
54857374 |
T |
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