View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_high_10 (Length: 307)
Name: NF14386_high_10
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 30804932 - 30805204
Alignment:
| Q |
14 |
aagaacaagcaatgccnnnnnnnttggcaaatgccagatatgccatgattacttctaaaaggactgtttttattacaattactccaacacatggaggatt |
113 |
Q |
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| T |
30804932 |
aagaacaagcaatgccaaaaaaattggcaaatgccagatatcccatgattacttctaaaagtactgtttttattacaattactccaacacatggaggatt |
30805031 |
T |
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| Q |
114 |
taacaagttgacttccacaaaatgaatcgtagctttatgggaatgacagttgttaatcaagaagtttttaagaatagaatacttacagcnnnnnnntaac |
213 |
Q |
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|| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||| |
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| T |
30805032 |
tagcaagttgactt--gcataatgaatcgtagctttatgggaatgaca---gttaatcaagaagtatttaagaatagaatatttacagcaaaaaaataac |
30805126 |
T |
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| Q |
214 |
gtcttcaacataaatttggacaagagaa--nnnnnnnaggagaagttttcataaacaaaatagtgtcttgtccactat |
289 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805127 |
gtcttcaacataaatttggacaagagaatttttttttaggagaagttttcataaacaaaatagtgtcttgtccactat |
30805204 |
T |
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