View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_high_16 (Length: 254)
Name: NF14386_high_16
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38091999 - 38092136
Alignment:
| Q |
1 |
ccatttggagaacgatttagctatactctcagatgtttgatacagggcccaatttggatgagtgtatgtacatattcactctaatcctctgtccttggga |
100 |
Q |
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| T |
38091999 |
ccatttggagaacgatttagctatactctcagatgtttgatacagggcccaatttggatgagtgtatgtacatattcactctaatcctctgtccttggga |
38092098 |
T |
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| Q |
101 |
gttgggacgaaccacggaggcaccgcaagaattgtatt |
138 |
Q |
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| T |
38092099 |
gttgggacgaaccacggaggcaccgcaagaattgtatt |
38092136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 38092292 - 38092379
Alignment:
| Q |
135 |
tattaaacttacattagtaaactaatgaaaacatccaagtaaaaagaaagttaaataaggctactatatttgattaaaaatttaaatc |
222 |
Q |
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| T |
38092292 |
tattaaacttagattagtaaactaatgaaactatccaagtaaaagaaaatttaaataaggctactatatttgattaaaaatttgaatc |
38092379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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