View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_high_17 (Length: 254)
Name: NF14386_high_17
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_high_17 |
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| [»] scaffold0493 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 202 - 40
Alignment:
| Q |
92 |
aatagcatactacagttgataggcttgaagacttcgatgtgatcttgacaacattgggcttgaaagcacccatcctgctgacaaacctacactagctgac |
191 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202 |
aatagcatactacagttgataggcttgaagacttcaatgtgatcttgacaacattgggcttgaaagcacccatcctgctgacaaacctacactagctgac |
103 |
T |
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| Q |
192 |
aataaacttttcttgttcaaaagttcatgcaattcaccagaataggtgtctaccagaagcacc |
254 |
Q |
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| T |
102 |
aataaactcttcttgttcaaaagttcatgcaattcaccagaataggtgtctaccagaagcacc |
40 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0493; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 267 - 235
Alignment:
| Q |
16 |
aaattaatattttgtgttacatgaaaagaaaat |
48 |
Q |
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| T |
267 |
aaattaatattttgtgttacatgaaaagaaaat |
235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 44997233 - 44997071
Alignment:
| Q |
92 |
aatagcatactacagttgataggcttgaagacttcgatgtgatcttgacaacattgggcttgaaagcacccatcctgctgacaaacctacactagctgac |
191 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997233 |
aatagcatactacagttgataggcttgaagacttcaatgtgatcttgacaacattgggcttgaaagcacccatcctgctgacaaacctacactagctgac |
44997134 |
T |
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| Q |
192 |
aataaacttttcttgttcaaaagttcatgcaattcaccagaataggtgtctaccagaagcacc |
254 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997133 |
aataaactcttcttgttcaaaagttcatgcaattcaccagaataggtgtctaccagaagcacc |
44997071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 44997298 - 44997266
Alignment:
| Q |
16 |
aaattaatattttgtgttacatgaaaagaaaat |
48 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44997298 |
aaattaatattttgtgttacatgaaaagaaaat |
44997266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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