View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_high_18 (Length: 246)
Name: NF14386_high_18
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10593617 - 10593394
Alignment:
| Q |
1 |
tagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga |
100 |
Q |
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| T |
10593617 |
tagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga |
10593518 |
T |
|
| Q |
101 |
ttccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagcagcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10593517 |
ttccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccattccgtagcagcag |
10593418 |
T |
|
| Q |
201 |
caatgttcaactttggccgagaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
10593417 |
caatgttcaactttggccgagaat |
10593394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 14375686 - 14375562
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||| |
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| T |
14375686 |
tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaac----ataaccattccatagc |
14375591 |
T |
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| Q |
196 |
agcagcaatgttcaactttggccgagaat |
224 |
Q |
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| T |
14375590 |
agcagcaatgttgaactttggccgagaat |
14375562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 41436323 - 41436447
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41436323 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41436418 |
T |
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| Q |
196 |
agcagcaatgttcaactttggccgagaat |
224 |
Q |
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|||| |||| || |||||||||||||||| |
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| T |
41436419 |
agcaacaatattgaactttggccgagaat |
41436447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 41449536 - 41449660
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41449536 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41449631 |
T |
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| Q |
196 |
agcagcaatgttcaactttggccgagaat |
224 |
Q |
| |
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||||||||| || |||||||||||||||| |
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| T |
41449632 |
agcagcaatattgaactttggccgagaat |
41449660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 14238453 - 14238576
Alignment:
| Q |
97 |
atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca |
196 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||||| |||| ||||| | ||| ||||||||||| ||||| |
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| T |
14238453 |
atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaa----gataaccattccatagca |
14238548 |
T |
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| Q |
197 |
gcagcaatgttcaactttggccgagaat |
224 |
Q |
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|||| |||||| || ||||||||||||| |
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| T |
14238549 |
gcagaaatgttgaaatttggccgagaat |
14238576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 32119103 - 32119221
Alignment:
| Q |
96 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag |
194 |
Q |
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|||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || || ||||||||||| ||| |
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| T |
32119103 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag |
32119198 |
T |
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| Q |
195 |
cagcagcaatgttcaactttggc |
217 |
Q |
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||||||||||||| ||||||||| |
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| T |
32119199 |
cagcagcaatgttgaactttggc |
32119221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
| Q |
17 |
tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat |
101 |
Q |
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||||| ||||||||||| ||||| |||| ||||||||||| ||||| ||| |||||| | |||||| ||||||| |||||||||| |
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| T |
32118988 |
tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat |
32119075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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