View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14386_high_2 (Length: 801)

Name: NF14386_high_2
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14386_high_2
NF14386_high_2
[»] chr6 (14 HSPs)
chr6 (21-790)||(30501564-30502335)
chr6 (24-243)||(30511268-30511488)
chr6 (23-230)||(30483604-30483812)
chr6 (24-243)||(24708406-24708626)
chr6 (369-602)||(30511578-30511819)
chr6 (468-602)||(24708021-24708149)
chr6 (501-598)||(30484211-30484308)
chr6 (674-785)||(30484407-30484518)
chr6 (355-437)||(30483938-30484020)
chr6 (355-452)||(24708186-24708284)
chr6 (725-785)||(30511916-30511976)
chr6 (701-785)||(24707808-24707892)
chr6 (136-220)||(30469915-30469999)
chr6 (505-591)||(30380586-30380672)


Alignment Details
Target: chr6 (Bit Score: 531; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 21 - 790
Target Start/End: Original strand, 30501564 - 30502335
Alignment:
Q  21 agtggcatcatatttgctacatatttgactacttcttcttcattgctataagcataaccccatatattgcgaattagtataaccaccgctccaactaaaa 120  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  30501564 agtggcatcatatttgctacatatttgaccacttcttcttcattgctataagcatatccccatatattgcgaattagcataaccactgctccaactaaaa 30501663  T
Q  121 tgctctcaataacggcaattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacgcgaacgctgcaaga 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30501664 tgctctcaataatggcaattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacacgaacgctgcaaga 30501763  T
Q  221 t-cattcaagcgctaataaaactaaagacagaaacttaaagaagagcattnnnnnnnnnnncatgaaaataa--caaatagaacaaaattttggagaatt 317  Q
      ||||||||||||||| |||| ||||||||||||||||  ||||||| |            |  |||||||  |||   ||| | || |||||||||||    
T  30501764 aacattcaagcgctaatgaaacgaaagacagaaacttaagaaagagcaatt-----------aaaaaaataaatcaacatgaaaataactttggagaatt 30501852  T
Q  318 tttgcttaagaaaatagtgaggttgctactgaactcaaagaatggagaaatactaaccttatagctccactaagtccaaatgggatcatccaaacaactg 417  Q
    || ||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  30501853 ttcgcttaggaaaatagtgaggttgctaatgaactcaaagaattgagaaatgctaaccttatagctccacttagtccaaatgggatcatccaaacgactg 30501952  T
Q  418 ctgttgtattcaaactgacaagccaagtcaccaacgataggttataataatcaaaataatatcgaagaggatctcgaatatatatat----------gaa 507  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||          |||    
T  30501953 ctgttgtattcaaactgacaagccaagtcaccaacaataggttaaaataatcaaaataatatcgaagaggatctcgaatatatatatatatatatatgaa 30502052  T
Q  508 actaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaaggagaaccactaattcaaatgaccatatttccaagctactcg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30502053 actaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaaggagaaccactaattcaaatgaccatatttccaagctactcg 30502152  T
Q  608 caacaaggcgaaaatnnnnnnntgaaaacaacatatgataatttttagtaaagaaactaaatagttaataaaattatataataatacgtagtgttataca 707  Q
    ||||||||| |||||       ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  30502153 caacaaggcaaaaataaaaaaatgaaaacaacatatgataattttcagtaaagaaaccaaatagttaataaaattatataataatatgtagtgttataca 30502252  T
Q  708 atactgaactattagaaaaggtgattaccaaaccattgcagctgaaggaatggcaagcttcaagaaaatcgggatattcttcg 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30502253 atactgaactattagaaaaggtgattaccaaaccattgcagctgaaggaatggcaagcttcaagaaaatcgggatattgttcg 30502335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 30511268 - 30511488
Alignment:
Q  24 ggcatcatatttgctacatatttgactacttcttcttcattgctataagcataaccccatatattgcgaattagtataaccaccgctccaactaaaatgc 123  Q
    |||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||  ||||    
T  30511268 ggcaacataattgctacatatttgacaacttcttcttcattgctataagcatatccccatatattgcgaattagtataatcacagctccaactacgatgc 30511367  T
Q  124 tctcaataacggcaattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacgcgaacgctgcaaga-tc 222  Q
    ||||||||| ||| || |||||||||||  | |||||||||||||| ||| ||||||||||||| ||||||||||| || || |||| ||||||||| ||    
T  30511368 tctcaataatggctatcactacaacgacatacactgccaaacgtgcggcccgtggattaccagccccgagttcattcgagacacgaatgctgcaagagtc 30511467  T
Q  223 attcaagcgctaataaaacta 243  Q
    ||||||||  |||| ||||||    
T  30511468 attcaagcattaatgaaacta 30511488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 30483604 - 30483812
Alignment:
Q  23 tggcatcatatttgctacatatttgactacttcttcttcattgctataagcataaccccatatattgcgaattagtataaccaccgctccaactaaaatg 122  Q
    |||||||||| |||||||||| || || ||||||||||||||||||||||| || ||||||| ||| |||| |||||||| |||  | |||||||| |||    
T  30483604 tggcatcatagttgctacataatttaccacttcttcttcattgctataagcgtagccccataaattacgaactagtataatcactccgccaactaagatg 30483703  T
Q  123 ctctcaataacggcaattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacgcgaacgctgcaa-gat 221  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| |||||||  ||    
T  30483704 ctctcaataacggcaatcactacaacgacgcaaactgccaaacgcgcagcctgtggatgaccagcaccaagttcatttgaaacacgaatgctgcaataat 30483803  T
Q  222 cattcaagc 230  Q
    |||||||||    
T  30483804 cattcaagc 30483812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 24708626 - 24708406
Alignment:
Q  24 ggcatcatatttgctacatatttgactacttcttcttcattgctataagcataaccccatatattgcgaattagtataaccaccgctccaactaaaatgc 123  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||| ||||||||||| ||||    
T  24708626 ggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatattgcgaattagtataatcacagctccaactaagatgc 24708527  T
Q  124 tctcaataacggcaattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacgcgaacgctgcaag-atc 222  Q
     |||||||| |||||| |||||||||||    |||||||||||| ||||| |||||| |||||| |||||||||||||| || ||||  ||||||| |||    
T  24708526 cctcaataatggcaatcactacaacgacattcactgccaaacgtacagcccgtggatgaccagccccgagttcatttgagacacgaatactgcaagaatc 24708427  T
Q  223 attcaagcgctaataaaacta 243  Q
    |||||||| ||| | ||||||    
T  24708426 attcaagccctagtcaaacta 24708406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 369 - 602
Target Start/End: Original strand, 30511578 - 30511819
Alignment:
Q  369 actaaccttatagctccactaagtccaaatgggatcatccaaacaactgctgttgtattcaaactgacaagccaa-gtcaccaacgataggtta------ 461  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| ||| | |||||||||||||||||  ||| ||||||||| | ||||||          
T  30511578 actaaccttatagctccgctaagtccaaaggggatcatccaaacaagtgccgatgtattcaaactgacaaaacaaagtcaccaacaaaaggttaatgaaa 30511677  T
Q  462 ----taataatcaa---aataatatcgaagaggatctcgaatatatatatgaaactaaccagatagaaagcaccgatgtttccaactttggatttggaag 554  Q
        ||||||| ||   |||||||| |||||| ||||  |||||      ||||| |||| ||||||||| || |||||||||||||| |||||||||||    
T  30511678 atcataataataaagtcaataatattgaagagaatcttcaatat------gaaaccaacctgatagaaagtactgatgtttccaacttcggatttggaag 30511771  T
Q  555 gagaccggaaaggagaaccactaattcaaatgaccatatttccaagct 602  Q
     ||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  30511772 aagaccggaaagaagaaccattaattcaaatgaccacatttccaagct 30511819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 468 - 602
Target Start/End: Complemental strand, 24708149 - 24708021
Alignment:
Q  468 tcaaaataatatcgaagaggatctcgaatatatatatgaaactaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaagg 567  Q
    |||||||||||||||| ||||||| ||||||      ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||     
T  24708149 tcaaaataatatcgaaaaggatcttgaatat------gaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaaga 24708056  T
Q  568 agaaccactaattcaaatgaccatatttccaagct 602  Q
    |||||||  |||||||||||||| | |||||||||    
T  24708055 agaaccatcaattcaaatgaccacaattccaagct 24708021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 501 - 598
Target Start/End: Original strand, 30484211 - 30484308
Alignment:
Q  501 atatgaaactaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaaggagaaccactaattcaaatgaccatatttcca 598  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||  |||||||||||||| |||||||    
T  30484211 atatgcaaccaaccagatagaaagcacagatgtttccaactttggatttggaagaacaccagaaaggagaaccatcaattcaaatgaccacatttcca 30484308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 674 - 785
Target Start/End: Original strand, 30484407 - 30484518
Alignment:
Q  674 aataaaattatataataatacgtagtgttatacaatactgaactattagaaaaggtgattaccaaaccattgcagctgaaggaatggcaagcttcaagaa 773  Q
    ||||||||| ||| |||||| ||   |||| ||| |||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||    
T  30484407 aataaaattctattataatatgttccgttaaacattactcaagtattagagaaggtgattaccaaaccattacagctgaaggaatggcaagcttcaggaa 30484506  T
Q  774 aatcgggatatt 785  Q
    ||| ||||||||    
T  30484507 aattgggatatt 30484518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 30483938 - 30484020
Alignment:
Q  355 aagaatggagaaatactaaccttatagctccactaagtccaaatgggatcatccaaacaactgctgttgtattcaaactgaca 437  Q
    |||||| ||||||||||||||||| |||||||||||||||||| ||||||||  ||||  ||||||||||||| |||||||||    
T  30483938 aagaattgagaaatactaaccttacagctccactaagtccaaaggggatcataaaaactgctgctgttgtatttaaactgaca 30484020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 452
Target Start/End: Complemental strand, 24708284 - 24708186
Alignment:
Q  355 aagaatggagaaatactaaccttatagctccactaagtccaaatgggatcatccaaacaactgctgttgtattcaaactgac-aagccaagtcaccaac 452  Q
    |||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||| | || ||| |||||||| |||||| || |||||||||||||    
T  24708284 aagaattgggaaatactaaccttgtagctccactaagtccaagggggatcatccaaatagctcctgctgtattcatactgacaaaaccaagtcaccaac 24708186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 725 - 785
Target Start/End: Original strand, 30511916 - 30511976
Alignment:
Q  725 aaggtgattaccaaaccattgcagctgaaggaatggcaagcttcaagaaaatcgggatatt 785  Q
    |||||||||||||||||||| ||||||||||||  |||||||||| |||||| ||||||||    
T  30511916 aaggtgattaccaaaccattacagctgaaggaacagcaagcttcaggaaaattgggatatt 30511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 785
Target Start/End: Complemental strand, 24707892 - 24707808
Alignment:
Q  701 ttatacaatactgaactattagaaaaggtgattaccaaaccattgcagctgaaggaatggcaagcttcaagaaaatcgggatatt 785  Q
    ||||||| |||| || |||| || ||| ||||||||||||||||  ||| |||||||||||||||||||  ||||| ||||||||    
T  24707892 ttatacagtacttaagtattcgagaagatgattaccaaaccattatagccgaaggaatggcaagcttcataaaaattgggatatt 24707808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 30469915 - 30469999
Alignment:
Q  136 caattactacaacgacgcagactgccaaacgtgcagcctgtggattaccagcaccgagttcatttgaaacgcgaacgctgcaaga 220  Q
    |||| |||||||| || || ||||||||||||||||||   | |||||| || || |||||||||||||| ||||||||||||||    
T  30469915 caatcactacaacaacacacactgccaaacgtgcagccctagcattacctgctccaagttcatttgaaacacgaacgctgcaaga 30469999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 591
Target Start/End: Original strand, 30380586 - 30380672
Alignment:
Q  505 gaaactaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaaggagaaccactaattcaaatgaccat 591  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||| |||||   ||| ||||| || |||| || |||||||| ||||    
T  30380586 gaaactaaccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccat 30380672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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