View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_1 (Length: 803)
Name: NF14386_low_1
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 752; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 2 - 785
Target Start/End: Original strand, 46874617 - 46875399
Alignment:
| Q |
2 |
ttctgtttattagtatagttgtatggttgaagatattgggattcattcggaaatgagatgtgtgctcaacatgggtgctgcatttttccctgtatgaaat |
101 |
Q |
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| T |
46874617 |
ttctgtttattggtatagttgtatggttgaagatattgggattcattcggaaatgagatgtgtgctcaacatgggtgctgcatttttccctgtatgaaat |
46874716 |
T |
|
| Q |
102 |
acaggtactggacttgtggataactggagaaccaaactgtattttattcgttgtaagatttatgaaagcttctcaaatgagttcaagactcataaattaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874717 |
acaggtactggacttgtggataactggagaaccaaactgtattttattcgttgtaagatttatgaaagcttctcaaatgagttcaagactcataaattaa |
46874816 |
T |
|
| Q |
202 |
tatgtgaagtaagaaattttacattactagagcttctcaatttattagtttctccttgcgtatgtctgtttcgcaatcaattcagaacacagtttgtggc |
301 |
Q |
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| T |
46874817 |
tatgtgaagtaagaaattttacattactagagcttctcaatttattagtttctccttgcgtatgtctgtttcgcaatcaattcagaacacagtttgtggc |
46874916 |
T |
|
| Q |
302 |
ctggtaaattcattgtgcgttcacagtcgctgtgatatatcatctgttatgtggcaaactatgatgttagttttgcttaatattgttcctgtcaagatga |
401 |
Q |
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| T |
46874917 |
ctggtaaattcattgtgcgttcacagtcactgtgatatatcatctgttatgtggcaaactatgatgttagttttgcttaatattgttcctgtcaagatga |
46875016 |
T |
|
| Q |
402 |
gacaggtttcttggatagtactctagctgttactcctcttcgttctttacagagttgcatacagaggcttacaaccggtcatttaatcggcttacttaaa |
501 |
Q |
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| T |
46875017 |
gacaggtttcttggatagtactctagctgttactcctcttcgttctttacagagttgcatacagaggcttacaatcggtcatttaatccacttacttaaa |
46875116 |
T |
|
| Q |
502 |
ctatgagctatgttcaatgttcattctcttgctttatttctgtatgtgatgctaaagctttactagttatgctttaaagtttaataactattgacctcta |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875117 |
ctatgagctatgttcaatgttcattctcttgctttatttctgtatgtgatgctaaagctttactagttatgctttaaagtttaataactattgacctcta |
46875216 |
T |
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| Q |
602 |
agagccaccaacctttttggtcctctcttttaacccttccttgattctcacttgacagttgaaccttgttgaaaaatcaaaacaaagctaacatgcatgc |
701 |
Q |
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| T |
46875217 |
agagccaccaacctttttggtcctctc-tttaacccttccttgattctcacttgacagttgaaccttgttgaaaaatcaaaacaaagctaacatgcatgc |
46875315 |
T |
|
| Q |
702 |
accttgtttggagcaacatcttcaagtgtttccttctcatttctatatattcctttttccaaaacagactctcaccctaaactt |
785 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46875316 |
accttgtttggagcaacatcttcaagtgtttccttctcatttctatatattcctttttccaaaacagactctcaccctacactt |
46875399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 46892525 - 46892597
Alignment:
| Q |
128 |
gagaaccaaactgtattttattcgttgtaagatttatgaaagcttctcaaatgagttcaagactcataaatta |
200 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
46892525 |
gagaaccaaactgtattttattcatagtaagatttatgaaagcttctcaattgagttctagactcataaatta |
46892597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 46892471 - 46892515
Alignment:
| Q |
54 |
atgagatgtgtgctcaacatgggtgctgcatttttccctgtatga |
98 |
Q |
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| T |
46892471 |
atgagatgtgtactcaacatgggtgcggcatttttccctatatga |
46892515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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