View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_12 (Length: 292)
Name: NF14386_low_12
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 34721428 - 34721565
Alignment:
| Q |
1 |
tgttgtaaagaaacgtggccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtgg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
34721428 |
tgttgtaaagaaacttggccattgtcttgttcccaaacttccccgacatttaggaggaaactcccttcgttaaaagagtgacggagtttattataagtgg |
34721527 |
T |
|
| Q |
101 |
atttagcaatggttgttttaccgatccctccctcgcca |
138 |
Q |
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| T |
34721528 |
atttagcaatggttgttttaccgatccctcccttgcca |
34721565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 34727760 - 34727989
Alignment:
| Q |
19 |
ccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtggatttagcaatggttgttt |
118 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||| || | |||| |||||| | ||||||||||| | ||||||||| ||||||| |
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| T |
34727760 |
ccattatcttgttcccaaacttccctgacatttaggaggaaactcttcgcctcaaaatcgtgacgaattttattataagcagctttagcaattgttgttt |
34727859 |
T |
|
| Q |
119 |
taccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttgtgcacgagattctacccc |
218 |
Q |
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| T |
34727860 |
tgccgatccctcccatgccccatattccaagcagtaaagggtcttttgattcttgattgttcagtagttgaataacatcttgaacacgagaatctacccc |
34727959 |
T |
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| Q |
219 |
taccggatggtctgcaacgaataagtctgt |
248 |
Q |
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| T |
34727960 |
cactggatggtctgcaacgaataagtctgt |
34727989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 18928984 - 18928737
Alignment:
| Q |
1 |
tgttgtaaagaaacgtggccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtgg |
100 |
Q |
| |
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||||||| |||||| || ||||| || ||||||||| |||||| |||||||||||||||| || | | |||| |||||| | ||||||||||| | |
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| T |
18928984 |
tgttgtagagaaacctgcccattatcgtgttcccaatcttccctgacatttaggaggaaactctttgcatcaaaatcgtgacgaattttattataagcag |
18928885 |
T |
|
| Q |
101 |
atttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttg |
200 |
Q |
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||||||||| |||||||| |||||||||||| || ||||| |||||||||| ||| || ||| | | | || |||||| | || ||||||||| |
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| T |
18928884 |
ctttagcaattgttgttttgccgatccctcccataccccatattccaagcagtaaagggtcttttgattcgtgacagttcaatagttgaacaacatcttg |
18928785 |
T |
|
| Q |
201 |
tgcacgagattctacccctaccggatggtctgcaacgaataagtctgt |
248 |
Q |
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| T |
18928784 |
aacacgagaatctacccccactggatggtctgcaacgaataattctgt |
18928737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 34715976 - 34716134
Alignment:
| Q |
106 |
gcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttgtgcac |
205 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||||||||| |||| || |||| ||| | | | ||| | |||||| |||||| ||| |
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| T |
34715976 |
gcaattgttgttttaccgatccctcctccgccccatatcccaagcagtacaggatcttctgattgtcgggattttagtagttgaataacctcttgtacac |
34716075 |
T |
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| Q |
206 |
gagattctacccctaccggatggtctgcaacgaataagtctgtgctggaaaaagaactg |
264 |
Q |
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||||||| ||||| || |||||||| ||||| ||||||| ||||||||| ||||||| |
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| T |
34716076 |
gagattccacccccactggatggtccgcaacaaataagttggtgctggaagtagaactg |
34716134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 34717711 - 34717871
Alignment:
| Q |
87 |
tttattataagtggatttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaatagg |
186 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||||||| ||| |||||||||| |||||||| || ||| |||| ||||| || || |
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| T |
34717711 |
tttattataaccggatttagcaatggttgttttgtcaatccctcccatgcctcatatcccaatcagtagagagtcttttgattgttggctgttcagaagt |
34717810 |
T |
|
| Q |
187 |
ttaataacatcttgtgcacgagattctacccctaccggatggtctgcaacgaataagtctg |
247 |
Q |
| |
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| ||||||||||||| ||| |||||| ||| | || |||||||| |||| |||||||||| |
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| T |
34717811 |
taaataacatcttgtacacaagattcaacctcgactggatggtccacaacaaataagtctg |
34717871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 18924078 - 18923816
Alignment:
| Q |
1 |
tgttgtaaagaaacgtggccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtgg |
100 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||| || |||||||| ||||| || | | |||| |||| ||| |||||||||| | |
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| T |
18924078 |
tgttgtaaagaaacttcgccattatcttgttcccaaacttgccggacatttaataggaagctctttgcctcaaaatggtgatggattttattataaactg |
18923979 |
T |
|
| Q |
101 |
atttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttg |
200 |
Q |
| |
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||| ||||| |||||||| || |||||||| ||||||||||||| || | ||| || |||| ||| | ||| || || | |||||| ||||| |
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| T |
18923978 |
ctttggcaattgttgttttgccaatccctccagtaccacatatcccaatcactcgagtttcttctgatggttcggtgttcagcagttgaataacctcttg |
18923879 |
T |
|
| Q |
201 |
tgcacgagattctacccctaccggatggtctgcaacgaataagtctgtgctggaaaaagaact |
263 |
Q |
| |
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| |||||||||| ||||| || |||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
18923878 |
tacacgagattcaacccccacaggatggtccgcaacgaataagttggtgctggaagaagaact |
18923816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34730900 - 34730959
Alignment:
| Q |
1 |
tgttgtaaagaaacgtggccattgtcttgttcccaaacttccccgacatttaggaggaaa |
60 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
34730900 |
tgttgtagagaaactatgccattatcttgttcccaaacttccctgacatttaggaggaaa |
34730959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 34715870 - 34715926
Alignment:
| Q |
3 |
ttgtaaagaaacgtggccattgtcttgttcccaaacttccccgacatttaggaggaa |
59 |
Q |
| |
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|||||||||||| | |||||| ||||||| ||||||||| |||||||||| |||||| |
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|
| T |
34715870 |
ttgtaaagaaacttcgccattatcttgtttccaaacttcaccgacatttaagaggaa |
34715926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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