View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_13 (Length: 275)
Name: NF14386_low_13
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2384535 - 2384808
Alignment:
| Q |
1 |
aaacttggagtttagtttacaaataagatcgtgaatgaggggcctagaagaaccggtaattagtatatcatctacataaataagggcacataaagtgaag |
100 |
Q |
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| T |
2384535 |
aaacttggagtttagtttacaaataagatcgtgaatgaggggcctagaagaaccggtaattagtatatcatctacataaataagggcacataaagtgaag |
2384634 |
T |
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| Q |
101 |
gatcacagcaatttaaagtaaaaccaaagagtattaaggtatgaattaagctctcatgtcaagcacgaggggcctgttttaggccgtataaagccttgtg |
200 |
Q |
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| T |
2384635 |
gatcacagcaatttaaagtaaaaccaaagagtattaaggtatgaattaagctctcatgccaagtatgaggggtctgttttaggccgtataaagccttgtg |
2384734 |
T |
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| Q |
201 |
taacttacacaccaaatttttatcagaagccactaattccggaggtcgaagcatataaacctcttcatgtaccac |
275 |
Q |
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| T |
2384735 |
taacttacacaccaaa-ttttatcagaagccacaaattccgtaggttgaagcatataaacctcttcatgtaccac |
2384808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 26530403 - 26530360
Alignment:
| Q |
169 |
ggggcctgttttaggccgtataaagccttgtgtaacttacacac |
212 |
Q |
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| T |
26530403 |
ggggcctgtttgaggccatataaagccttgtgcaacttacacac |
26530360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 2393202 - 2393252
Alignment:
| Q |
48 |
aagaaccggtaattagtatatcatctacataaataagggcacataaagtga |
98 |
Q |
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| T |
2393202 |
aagaatcggtaattaagatatcatctacataaagaagggcatataaagtga |
2393252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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