View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14386_low_14 (Length: 273)

Name: NF14386_low_14
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14386_low_14
NF14386_low_14
[»] scaffold0091 (3 HSPs)
scaffold0091 (12-127)||(29057-29173)
scaffold0091 (190-267)||(28917-28994)
scaffold0091 (205-267)||(24720-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (12-126)||(14378-14493)
scaffold0218 (190-267)||(14237-14314)
[»] chr3 (9 HSPs)
chr3 (12-120)||(16642304-16642413)
chr3 (12-125)||(4712799-4712913)
chr3 (12-127)||(14062777-14062893)
chr3 (12-120)||(14055036-14055145)
chr3 (24-120)||(13926860-13926957)
chr3 (203-267)||(16642133-16642197)
chr3 (203-267)||(4712995-4713059)
chr3 (203-267)||(14062981-14063045)
chr3 (204-267)||(14055221-14055284)
[»] chr6 (4 HSPs)
chr6 (12-127)||(14989374-14989490)
chr6 (12-125)||(14980262-14980376)
chr6 (203-267)||(14980458-14980522)
chr6 (90-127)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (12-127)||(51658661-51658777)
chr1 (24-127)||(13882248-13882351)
chr1 (44-112)||(1567097-1567166)
chr1 (203-267)||(13882462-13882526)
chr1 (206-264)||(51658854-51658912)
[»] chr7 (9 HSPs)
chr7 (12-127)||(48376787-48376903)
chr7 (12-127)||(16060512-16060628)
chr7 (24-127)||(4531761-4531865)
chr7 (190-267)||(16060374-16060449)
chr7 (204-267)||(9080206-9080269)
chr7 (215-267)||(16069015-16069067)
chr7 (215-267)||(48376637-48376689)
chr7 (90-127)||(9080338-9080375)
chr7 (66-112)||(37945878-37945924)
[»] chr8 (6 HSPs)
chr8 (12-127)||(23658526-23658650)
chr8 (12-127)||(23657751-23657885)
chr8 (216-267)||(23657648-23657699)
chr8 (216-267)||(23658423-23658474)
chr8 (215-267)||(17862251-17862303)
chr8 (24-57)||(29293929-29293962)
[»] scaffold1269 (1 HSPs)
scaffold1269 (12-104)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (52-127)||(130795-130870)
scaffold0003 (203-267)||(130633-130697)
[»] chr2 (3 HSPs)
chr2 (24-112)||(23656472-23656561)
chr2 (24-107)||(44586472-44586556)
chr2 (215-266)||(23907788-23907839)
[»] scaffold0319 (1 HSPs)
scaffold0319 (12-81)||(13569-13639)
[»] scaffold0063 (2 HSPs)
scaffold0063 (190-267)||(28443-28518)
scaffold0063 (89-127)||(28342-28380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (203-262)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (215-267)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (215-267)||(25756788-25756840)
chr5 (215-267)||(25790961-25791013)
chr5 (220-264)||(24832209-24832253)
[»] chr4 (3 HSPs)
chr4 (36-106)||(3576240-3576311)
chr4 (220-267)||(19728457-19728504)
chr4 (24-76)||(18231489-18231542)


Alignment Details
Target: scaffold0091 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 29173 - 29057
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29173 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 29074  T
Q  111 atgttagtgaagatgag 127  Q
    |||||||||| ||||||    
T  29073 atgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  205 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 14493 - 14378
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14493 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14394  T
Q  111 atgttagtgaagatga 126  Q
    |||||||||| |||||    
T  14393 atgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 14314 - 14237
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 16642413 - 16642304
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642413 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 16642314  T
Q  111 atgttagtga 120  Q
    ||||||||||    
T  16642313 atgttagtga 16642304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 4712799 - 4712913
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4712799 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 4712898  T
Q  111 atgttagtgaagatg 125  Q
    |||||||||| ||||    
T  4712899 atgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 14062777 - 14062893
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14062777 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14062876  T
Q  111 atgttagtgaagatgag 127  Q
    |||||||| | ||||||    
T  14062877 atgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 14055036 - 14055145
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| ||||| || ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14055036 agagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14055135  T
Q  111 atgttagtga 120  Q
    ||||||||||    
T  14055136 atgttagtga 14055145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 13926860 - 13926957
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    |||||||||||||||| | ||||||||||||| |  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  13926860 gaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 16642197 - 16642133
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 4712995 - 4713059
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 14062981 - 14063045
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 14055221 - 14055284
Alignment:
Q  204 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 14989374 - 14989490
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989374 agagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14989473  T
Q  111 atgttagtgaagatgag 127  Q
    |||||||||| ||||||    
T  14989474 atgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14980262 - 14980376
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14980262 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14980361  T
Q  111 atgttagtgaagatg 125  Q
    |||||||||| ||||    
T  14980362 atgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 14980458 - 14980522
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgaagatgag 127  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 51658661 - 51658777
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51658661 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat 51658760  T
Q  111 atgttagtgaagatgag 127  Q
    |||||||||| ||||||    
T  51658761 atgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 13882248 - 13882351
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaaga 123  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13882248 gaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatga 13882347  T
Q  124 tgag 127  Q
    ||||    
T  13882348 tgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 1567097 - 1567166
Alignment:
Q  44 aagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||| ||| |||||||    
T  1567097 aagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 13882462 - 13882526
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  206 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgat 264  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 48376903 - 48376787
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376903 agagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 48376804  T
Q  111 atgttagtgaagatgag 127  Q
    |||||| ||| ||||||    
T  48376803 atgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 16060628 - 16060512
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 110  Q
    |||||||||||| |||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16060628 agagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttat 16060529  T
Q  111 atgttagtgaagatgag 127  Q
    |||||||||| ||||||    
T  16060528 atgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 4531761 - 4531865
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaag 122  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| ||| ||| |    
T  4531761 gaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattgatg 4531860  T
Q  123 atgag 127  Q
    |||||    
T  4531861 atgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 9080269 - 9080206
Alignment:
Q  204 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 16069015 - 16069067
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgaagatgag 127  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 37945878 - 37945924
Alignment:
Q  66 tatatatgtaattaaataaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  37945878 tatatatgtaaataaataaatacgataagaaatgacgatgtttatat 37945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 23658650 - 23658526
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatata--------tgtaattaaataaatacgatgagaaatgata 102  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||    
T  23658650 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattata 23658551  T
Q  103 atgtttatatgttagtgaagatgag 127  Q
    |||||||||||||||||| ||||||    
T  23658550 atgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 23657885 - 23657751
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatat------------------atatgtaattaaataaatacgatg 92  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||                  ||||||||||||||||||||||||    
T  23657885 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatg 23657786  T
Q  93 agaaatgataatgtttatatgttagtgaagatgag 127  Q
    |||||| ||||||||||||||||||||| ||||||    
T  23657785 agaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  216 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  216 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 17862251 - 17862303
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 29293962 - 29293929
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacga 57  Q
    |||||||||||||||| |||||||||||||||||    
T  29293962 gaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataat 104  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  94 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  52 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 130697 - 130633
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 23656472 - 23656561
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatat 112  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||| || ||||||||||| ||||||||||||||| |||||||    
T  23656472 gaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatat 23656561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 44586472 - 44586556
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacgaaga-tattatatatatgtaattaaataaatacgatgagaaatgataatgtt 107  Q
    |||||||||||| |||||| ||||||||||||||  | ||||||||||||||||  |||| | ||||||  |||||||| |||||    
T  44586472 gaggaatccatactgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtt 44586556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 23907839 - 23907788
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgt 266  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 13569 - 13639
Alignment:
Q  12 agagatgaataa-gaggaatccataatgtaacgaagagtgatgacgaagatattatatatatgtaattaaa 81  Q
    |||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||    
T  13569 agagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaaa 13639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  89 gatgagaaatgataatgtttatatgttagtgaagatgag 127  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatg 262  Q
    ||||||| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 1432 - 1484
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 25756788 - 25756840
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 25791013 - 25790961
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  220 atgagaatgaagacgtataattatgatgatgacttgaatgatgat 264  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  36 atgtaacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgt 106  Q
    |||| |||||||||||||||||  ||| ||||||| |||||  |||||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 19728457 - 19728504
Alignment:
Q  220 atgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 18231489 - 18231542
Alignment:
Q  24 gaggaatccataatgtaacgaagagtgatgacga-agatattatatatatgtaa 76  Q
    |||||||||||| |||||| ||||||||||||||   |||||||||||||||||    
T  18231489 gaggaatccatactgtaacaaagagtgatgacgattaatattatatatatgtaa 18231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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