View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_19 (Length: 240)
Name: NF14386_low_19
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 42614688 - 42614907
Alignment:
| Q |
1 |
taattgttactttctccattcctagtttattttgctactcactcaacattctcttgcaaaagccacccattttcttctattttttggattaaaaaatttg |
100 |
Q |
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| T |
42614688 |
taattgttaatttctccattcctagtttattttgctactcactcaacattctcttgcaaaagccacccattttcttctattttttggattaaaaaatttg |
42614787 |
T |
|
| Q |
101 |
tacatataaatttggagtacagtgtgagattaatgataccattttaaagttttcaatgagttgtaaagatatttaaaaaatgtagttgagttgtttagat |
200 |
Q |
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| T |
42614788 |
tacatataaatttggagtacagtgtgagattaatgataccattttaaagttttcaatgagttctaaagatatttaaaaaatgtagttgagttgtttagat |
42614887 |
T |
|
| Q |
201 |
tatcatgatattgatacgaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
42614888 |
tatcatgatattgatacgaa |
42614907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 2446836 - 2446937
Alignment:
| Q |
82 |
ttttggattaaaaaatttgtacatataaa-tttggagtacagtgtgagattaatgatacca-ttttaaagttttcaatgagttgtaaagatatttaaaaa |
179 |
Q |
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|||||||||||||| |||||| | |||| ||||||||| | | |||||||||| | |||| ||||| |||||| |||| ||||| ||||||||||||| |
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| T |
2446836 |
ttttggattaaaaactttgtaaaattaaaatttggagtatattttgagattaataaaaccaattttagagtttttgatgaattgtatagatatttaaaaa |
2446935 |
T |
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| Q |
180 |
at |
181 |
Q |
| |
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|| |
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|
| T |
2446936 |
at |
2446937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 2457563 - 2457623
Alignment:
| Q |
60 |
aagccacccattttcttctattttttggattaaaaaatttgtacatat-aaatttggagta |
119 |
Q |
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| T |
2457563 |
aagccacccactttcttttactttttagattaaaaaatttgtaaaaataaaatttggagta |
2457623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 38346519 - 38346465
Alignment:
| Q |
143 |
tttaaagttttcaatgagttgtaaagatatttaaaaaatgtagttgagttgttta |
197 |
Q |
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| T |
38346519 |
tttaaagttttagatgagttgtataaatatttaaaaaatgtagttgagtggttta |
38346465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 42691361 - 42691419
Alignment:
| Q |
139 |
ccattttaaagttttcaatgagttgtaaagatatttaaaaaatgtagttgagttgttta |
197 |
Q |
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| T |
42691361 |
ccattttaaaattttaaatgagtggtatgaatatttaaaaaatgtagttgagtcgttta |
42691419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 37626906 - 37626943
Alignment:
| Q |
160 |
gttgtaaagatatttaaaaaatgtagttgagttgttta |
197 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
37626906 |
gttgtatagatatttaaaaaatatagttgagttgttta |
37626943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 20207168 - 20207080
Alignment:
| Q |
110 |
atttggagtacagtgtgagattaatgatac-cattttaaagttttcaatgagttgtaaagatatttaaaaaatgtagttgagttgttta |
197 |
Q |
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|||||||||| | |||||||||||| | || ||||||| |||||| |||||||| || ||||||| ||||||| ||||||||||||| |
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| T |
20207168 |
atttggagtatactgtgagattaataaaactcattttagagttttgaatgagttttatgaatatttagaaaatgtggttgagttgttta |
20207080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 9104687 - 9104629
Alignment:
| Q |
139 |
ccattttaaagttttcaatgagttgtaaagatatttaaaaaatgtagttgagttgttta |
197 |
Q |
| |
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|||||||||| |||| | |||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
9104687 |
ccattttaaaattttagaagagtggtatagatatttaaaaaatgtagttgagtggttta |
9104629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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