View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_20 (Length: 239)
Name: NF14386_low_20
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 46631408 - 46631203
Alignment:
| Q |
21 |
tgaaggactaaattggccgaccctt-------ggcgataaatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaatt |
113 |
Q |
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| T |
46631408 |
tgaaggactaaattggccgacccttaaattgtggcgataaatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaatt |
46631309 |
T |
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| Q |
114 |
cgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggactaggaaaactaacttcataccaagtgggatcgaaagacacattgaattttaac |
213 |
Q |
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| T |
46631308 |
cgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggactaggaaaactaacttcataccaagtgagatcgaaagacacattgaattttaac |
46631209 |
T |
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| Q |
214 |
agcagc |
219 |
Q |
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|||||| |
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| T |
46631208 |
agcagc |
46631203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 35138536 - 35138631
Alignment:
| Q |
67 |
acgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
162 |
Q |
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| T |
35138536 |
acgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta |
35138631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 32811090 - 32811192
Alignment:
| Q |
51 |
taaatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaaga-ttaaattgaccgacccttaaa |
149 |
Q |
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| T |
32811090 |
taaatttggaaaaataacataattaactgacgttgttcaatttaagggactaaatttctattttgcaaatttgagggactaaaatttaccgacccttata |
32811189 |
T |
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| Q |
150 |
att |
152 |
Q |
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||| |
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| T |
32811190 |
att |
32811192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 42510790 - 42510706
Alignment:
| Q |
78 |
tgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
162 |
Q |
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| T |
42510790 |
tgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttacaatttcaaggacta |
42510706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 8951360 - 8951432
Alignment:
| Q |
86 |
ttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaagg |
158 |
Q |
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|||| ||||||||||||| | ||| ||| |||||||| | || ||||||||| |||||||| |||||||||| |
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| T |
8951360 |
ttcaatttaagggactaatttgctatttcacaaatttggaggactaaattgacagacccttataatttcaagg |
8951432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 11567623 - 11567578
Alignment:
| Q |
117 |
aaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
162 |
Q |
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| T |
11567623 |
aaatttgagggactaaattgaccgacccttacaatttcaaggacta |
11567578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 5540039 - 5539971
Alignment:
| Q |
94 |
aagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
162 |
Q |
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||||||||||| | ||| ||| ||||||||| |||| ||||||| |||||||| |||||||| ||||| |
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| T |
5540039 |
aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta |
5539971 |
T |
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