View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14386_low_23 (Length: 229)
Name: NF14386_low_23
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_23 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 35902358 - 35902584
Alignment:
| Q |
2 |
gaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35902358 |
gaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagc |
35902457 |
T |
|
| Q |
102 |
aattacctctgcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataacccatcaattactattatatattatgataaaaaatattt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35902458 |
aattacctctgcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataa-ccatcaattactattatatattatgataaaaaatattt |
35902556 |
T |
|
| Q |
202 |
gaggctatggtaactttttatgtatgta |
229 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
35902557 |
gaggctatagtaactttttatgtatgta |
35902584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 37024571 - 37024448
Alignment:
| Q |
6 |
caaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaatt |
105 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
37024571 |
caaaaggatgtctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatc |
37024472 |
T |
|
| Q |
106 |
acctctgcctttgcaggtaactct |
129 |
Q |
| |
|
|| || ||||| ||||||| |||| |
|
|
| T |
37024471 |
acttcagccttggcaggtagctct |
37024448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 2051979 - 2052055
Alignment:
| Q |
37 |
ccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctctgc |
113 |
Q |
| |
|
|||||||| |||| || |||| |||||| ||||||||||||||||||| || ||||||| | ||||||||||||| |
|
|
| T |
2051979 |
ccttggatgcccaacatgtgatttccatacctaaacatctcaattccagtcttttctgaccaaccaattacctctgc |
2052055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University