View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14386_low_24 (Length: 225)

Name: NF14386_low_24
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14386_low_24
NF14386_low_24
[»] chr7 (6 HSPs)
chr7 (1-207)||(34720956-34721162)
chr7 (6-67)||(34727413-34727474)
chr7 (6-67)||(34735170-34735231)
chr7 (6-67)||(34730571-34730632)
chr7 (6-49)||(18924337-18924380)
chr7 (6-49)||(18929252-18929295)
[»] chr4 (17 HSPs)
chr4 (1-69)||(6624090-6624158)
chr4 (4-69)||(6500009-6500074)
chr4 (6-69)||(6547564-6547627)
chr4 (4-45)||(4126135-4126176)
chr4 (4-45)||(4322800-4322841)
chr4 (4-49)||(6751088-6751133)
chr4 (4-69)||(6794685-6794750)
chr4 (4-69)||(6814015-6814080)
chr4 (4-43)||(4343205-4343244)
chr4 (4-42)||(4135482-4135520)
chr4 (7-49)||(6756709-6756751)
chr4 (4-45)||(4333815-4333856)
chr4 (4-45)||(4351492-4351533)
chr4 (4-49)||(6649296-6649341)
chr4 (4-69)||(6672897-6672962)
chr4 (4-69)||(6726171-6726236)
chr4 (4-49)||(6834409-6834454)
[»] scaffold0373 (1 HSPs)
scaffold0373 (4-69)||(11553-11618)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 34721162 - 34720956
Alignment:
Q  1 gagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgctcacagttccaaatgtgttgttgagtattgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721162 gagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgctcacagttccaaatgtgttgttgagtattgta 34721063  T
Q  101 gaagaataccattacttcttgaaatcatcgggtcctttttgtccaatccaagtagaagagtgtggggtacggttcggcataaactagtaaattgcgaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721062 gaagaataccattacttcttgaaatcatcgggtcctttttgtccaatccaagtagaagagtgtggggtacggttcggcataaactagtaaattgcgaggg 34720963  T
Q  201 gataacg 207  Q
    |||||||    
T  34720962 gataacg 34720956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 34727474 - 34727413
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttg 67  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||    
T  34727474 tgaatctcttgagctttttagttggcatgcattcaagcaaccaattcctatagaaggttttg 34727413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 34735231 - 34735170
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttg 67  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||| | |||||||||||    
T  34735231 tgaatctcttgagctttttagttggcatgcattcaaacaaccaattcctatagaaggttttg 34735170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 34730632 - 34730571
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttg 67  Q
    |||||||||||| ||||| |||||| ||| |||||||||||||||||| | |||||||||||    
T  34730632 tgaatctcttgagcttttcagttggcatgtattcaagcaaccaattcctatagaaggttttg 34730571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 18924337 - 18924380
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  18924337 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaa 18924380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 18929252 - 18929295
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  18929252 tgaatctcttgagctttttagttggcatgcattcaagcaaccaa 18929295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6624158 - 6624090
Alignment:
Q  1 gagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||||| |||   |||||||||||||    
T  6624158 gagagtgaatctcttgagcttttcagttggcatgcattcaagcaaccaagtccggcagaaggttttgct 6624090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 6500074 - 6500009
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||||| ||||| || ||| |||||||||||||||||| ||||| ||||| |||||||    
T  6500074 agtgaatctcttgagcttttcagctggcatgcattcaagcaaccaactccaacagaagattttgct 6500009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 6547627 - 6547564
Alignment:
Q  6 tgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||| || || |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  6547627 tgaatctcttgagctattcagttggcatgcattcaagcaaccaagtccaatagaagattttgct 6547564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4126176 - 4126135
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaa 45  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  4126176 agtgaatctcttgaactttttagttggcatgctttcaagcaa 4126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4322841 - 4322800
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaa 45  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  4322841 agtgaatctcttgagctttttagttggcatgcattcaagcaa 4322800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6751088 - 6751133
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||    
T  6751088 agtgaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6751133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6794685 - 6794750
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||| | ||||| |||||| |||||||||||||||||| ||||| ||||  |||||||    
T  6794685 agtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 6794750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6814015 - 6814080
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||| | ||||| |||||| |||||||||||||||||| ||| | ||||| |||||||    
T  6814015 agtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccgatagaagattttgct 6814080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 4343205 - 4343244
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagc 43  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  4343205 agtgaatctcttgagctttttagttggcatgcattcaagc 4343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 4135520 - 4135482
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaag 42  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  4135520 agtgaatctcttgagctttttagttggcatgcattcaag 4135482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 6756709 - 6756751
Alignment:
Q  7 gaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||    
T  6756709 gaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 4333815 - 4333856
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaa 45  Q
    |||||||||||||| |||||||||| | ||||||||||||||    
T  4333815 agtgaatctcttgagctttttagtttgcatgcattcaagcaa 4333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 4351492 - 4351533
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaa 45  Q
    |||||||||||||| | |||||||||| ||||||||||||||    
T  4351492 agtgaatctcttgagcgttttagttggcatgcattcaagcaa 4351533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6649296 - 6649341
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    |||||||||||||| ||||| |||||| |||||||||| |||||||    
T  6649296 agtgaatctcttgagcttttcagttggcatgcattcaatcaaccaa 6649341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6672897 - 6672962
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    ||||||||||| || ||||| |||||| |||| ||||||| ||||||||||  ||||| |||||||    
T  6672897 agtgaatctctagagcttttcagttggcatgcgttcaagctaccaattccagtagaagattttgct 6672962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6726171 - 6726236
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||  | ||||| |||||| |||||||||||||| ||| ||||| ||||| |||||||    
T  6726171 agtgaatctctcaagcttttcagttggcatgcattcaagcaatcaagtccaaaagaagattttgct 6726236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6834409 - 6834454
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 49  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||    
T  6834409 agtgaatctcttgagcttttcagttggcatgcattcaagctaccaa 6834454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 11618 - 11553
Alignment:
Q  4 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 69  Q
    |||||||||||| | ||||| |||||| |||||||||||||||||| ||||| ||||  |||||||    
T  11618 agtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University