View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_3 (Length: 678)
Name: NF14386_low_3
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 659
Target Start/End: Complemental strand, 30598366 - 30597721
Alignment:
| Q |
17 |
cacaacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgttcttc---gcatactatcccttttggatgctgacgaagctgttaaaactt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30598366 |
cacaacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgttcttcttcgcatactatcccttttggatgctgacgaagctgttaaaactt |
30598267 |
T |
|
| Q |
114 |
gcacaatctctagtagatggagacatctctggaagcatcttcccacccttatattatgttcttcacactttatgaggatcaaaagtttcaatagatttgt |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30598266 |
gcacaatctctagtagatggagacatctttggaagcatcttcccacccttatattatgttcttcacactttatgaggatcaaaagtttcaatagatttgt |
30598167 |
T |
|
| Q |
214 |
gtctcgtattttgtgtcttcgtgatgtgtcaaccccgctgcacgctgttgattttctgtgccggggtgttgtggatcctcgcctactcaaaaaggtcatc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30598166 |
gtctcgtattttgtgtcttcgtgatgtgtcaaccccgctgcacgctgttgattttctgtgccggggtgttgtggatcctcgcctactcaaaaaggtcgtc |
30598067 |
T |
|
| Q |
314 |
acatacgctgtttcacataatgttgagaaattaagagtccatgcctgctgtgattttcaacacttctcatcttgcnnnnnnncatgtcacactttaacct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30598066 |
acatacgctgtttcacataatgttgagaaattaagagtccatgcctgctgtgattttcaacacttctcatcttgctttttttcatgtcacactttaacct |
30597967 |
T |
|
| Q |
414 |
ctcttgacctttgtgttggtccccctagaactgatgagagattatcatttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcatt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597966 |
ctcttgacctttgtgttggtccccctagaactgatgagagattatcatttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcatt |
30597867 |
T |
|
| Q |
514 |
cgccttttgtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597866 |
cgccttttgtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaa |
30597767 |
T |
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| Q |
614 |
agcctctgtatatcaagtgttacacttaccaatttgactatagtag |
659 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30597766 |
agcctctgcatatcaagtgttacacttaccaatttgactatagtag |
30597721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 640
Target Start/End: Original strand, 6844519 - 6844699
Alignment:
| Q |
460 |
atttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggca |
559 |
Q |
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|||||||| || ||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||| || |||||||||| ||| |||||||||||| |
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| T |
6844519 |
atttcctatttcgcttgatttgccagcattagccaccttgtctctagagtcgttcatctttcctgttggcgatgatggttgtgttgaccctttttcggca |
6844618 |
T |
|
| Q |
560 |
ttaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgtatatcaagtgttacactt |
640 |
Q |
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|| | ||||||||| | |||||| |||| ||| |||| ||||||| | | ||| ||||||||||||||||| ||||||| |
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| T |
6844619 |
tttagcagtttgaatagtttgattattcggtactgtagagttcttggtcaacaaaacctctgtatatcaagtgctacactt |
6844699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 648
Target Start/End: Original strand, 6889514 - 6889702
Alignment:
| Q |
460 |
atttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggca |
559 |
Q |
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|||||||| || |||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| || |||||| | ||||||||||||||||| |
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| T |
6889514 |
atttcctagttctcttaatttgccagcattagccaccttgtttctagagtcattcacctttcctgttgacgatgatggtcatactgagcctttttcggca |
6889613 |
T |
|
| Q |
560 |
ttaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgtatatcaagtgttacacttaccaattt |
648 |
Q |
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|| | |||||||| | |||||| |||| | |||||| |||||||||| | ||| |||||| |||| ||||| ||||||| ||||||| |
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| T |
6889614 |
tttagtagtttgaatagtttgatcattcggggttgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaattt |
6889702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 6844078 - 6844294
Alignment:
| Q |
20 |
aacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgtt---cttcgcatactatcccttttggatgctgacgaagctgttaaaacttgca |
116 |
Q |
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|||||| ||||| ||||||| |||||||||||||||||| |||||||| |||| |||||| || |||||||||| | |||||| ||||||||| |
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| T |
6844078 |
aacgacgatgtagaagaagaccgcctcagtgatttacccgattgtgttattcttcacatactctcttttttggatgc--aatgcgctgttcaaacttgca |
6844175 |
T |
|
| Q |
117 |
caatctctagtagatggagacatctctggaagcatcttcccacccttatattatgttcttcacactttatgaggatcaaaagtttcaatagatttgtgtc |
216 |
Q |
| |
|
| || | ||||||| |||| ||||| ||||||||||| |||||||| |||||||||||| ||| || | ||||||||||| ||||||||| |
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| T |
6844176 |
ttctatccaaaagatggaacaatctttggaaacatcttcccactcttatattgaagacttcacactttacgagtatgacaagtttcaataaatttgtgtc |
6844275 |
T |
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| Q |
217 |
tcgtattttgtgtcttcgt |
235 |
Q |
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||||||||||| ||||||| |
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| T |
6844276 |
tcgtattttgtctcttcgt |
6844294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 648
Target Start/End: Original strand, 6849020 - 6849145
Alignment:
| Q |
523 |
tgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgt |
622 |
Q |
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||||||||| |||||||||||||| |||||||| ||||| | | ||||||| | |||||| |||| ||||||| |||||| || | ||| |||||| |
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| T |
6849020 |
tgttggtgatgatggttgtgctgaacctttttccgcatttagctgtttgaacagtttgatcattcgttattgtagagttcttaatagacaaaacctctgc |
6849119 |
T |
|
| Q |
623 |
atatcaagtgttacacttaccaattt |
648 |
Q |
| |
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|||||||||| ||||||| ||||||| |
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| T |
6849120 |
atatcaagtgctacacttgccaattt |
6849145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 6889257 - 6889313
Alignment:
| Q |
203 |
aatagatttgtgtctcgtattttgtgtcttcgtgatgtgtcaaccccgctgcacgct |
259 |
Q |
| |
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|||| |||||||||||| ||||||| ||||||| ||| ||||||||| |||| |||| |
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| T |
6889257 |
aataaatttgtgtctcgcattttgtctcttcgtaatgcgtcaaccccactgcgcgct |
6889313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 7118824 - 7118881
Alignment:
| Q |
128 |
agatggagacatctctggaagcatcttcccacccttatattatgttcttcacacttta |
185 |
Q |
| |
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||||||| | |||| |||||||||||||||||||||| | || |||||||||||||| |
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| T |
7118824 |
agatggaaaaatctatggaagcatcttcccacccttacactaacttcttcacacttta |
7118881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 7126254 - 7126302
Alignment:
| Q |
396 |
catgtcacactttaacctctcttgacctttgtgttggtccccctagaac |
444 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||| || |||||||| |
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| T |
7126254 |
catgtcacactttaacctctcttaacctttatgttgctcatcctagaac |
7126302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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