View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14386_low_4 (Length: 551)
Name: NF14386_low_4
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 38 - 468
Target Start/End: Complemental strand, 44365048 - 44364618
Alignment:
| Q |
38 |
aataaataaagcaggaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaa |
137 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44365048 |
aataaataaagcagtaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaa |
44364949 |
T |
|
| Q |
138 |
gaaacataaactactcaaattgaaaggaagaaacagacagaacaaacaaagtctcactatagctaaccctaggaccatgcctgtctggatctatgtatct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
44364948 |
gaaacataaactactcaaattgaaaggaagaaacagacagaacaaacaaagtctcactatggctaaccctaggactatgcctgtctgaatctatgtatct |
44364849 |
T |
|
| Q |
238 |
agttaatctctctctaagaatgactgagaaggatagtcctctctgccaatccaaaaggtgaacgagattgaagacgcttcacatctttgagtctcctcat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44364848 |
agttaatctctctctaagaatgactgagaaggatagtcctctctgccaatccaagaggtgaacgagattgaagacgcttcacatctttgagtctcctcat |
44364749 |
T |
|
| Q |
338 |
atataactctgcctccaatgatggttgtttgattttctcgatttcttccttgattttgatcacttggctatgaacagcaagacctgcatacacctcctca |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44364748 |
atataactctgcctccaatgatggttgtttgattttctcgatttcttccttgattttgatcacttggctatgaacagcaagacctgcatacacctcctca |
44364649 |
T |
|
| Q |
438 |
tcactcttgttgttgttgctcttgaattcca |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44364648 |
tcactcttgttgttgttgctcttgaattcca |
44364618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 44364592 - 44364551
Alignment:
| Q |
494 |
aaacaatactgaaaatctagtcagatttgtttgtcttggtat |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44364592 |
aaacaatactgaaaatctagtcagatttgtttgtcttggtat |
44364551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University