View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14386_low_6 (Length: 488)
Name: NF14386_low_6
Description: NF14386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14386_low_6 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 31093302 - 31093208
Alignment:
| Q |
342 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatcctgaccccgatgattttgatctcatccagttccgggaaagcattttaa |
436 |
Q |
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| T |
31093302 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatcccaatgattttgatctcatccagttccgggaaagcattttaa |
31093208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 31073966 - 31074093
Alignment:
| Q |
28 |
tggaataatttaaagtatgatgaagggggaagagggtggttaaattatttaggtcatagtacattacatgacaaaactgtatgaactaagtggtgttatg |
127 |
Q |
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| T |
31073966 |
tggaataatttaaagtatgatgaag-------agggtggttaaattattttggccatagtacattataagacaaaattgaatgaactaagtggtgttatg |
31074058 |
T |
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| Q |
128 |
ggactccatcatacattttttcactaggcacaaaa |
162 |
Q |
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| T |
31074059 |
ggactccatcatacattacttcactacccacaaaa |
31074093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 31033934 - 31034026
Alignment:
| Q |
341 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcctgaccccgatgattttgatctcatccagttccgggaaagcattt |
433 |
Q |
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| T |
31033934 |
ctcctaaaaaaggtaaagggttagtccacgacttcgatattgaatatccaaaccctgatgattatgaccttatccagtttcaggaaagcattt |
31034026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 2020 - 1972
Alignment:
| Q |
341 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
389 |
Q |
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| T |
2020 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
1972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 1970 - 1908
Alignment:
| Q |
406 |
gatctcatccagttccgggaaagcattttaaaatgcagttctaaaatagtatcagtcgaaacactt |
471 |
Q |
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| T |
1970 |
gatctcatccggttccaggaaagcattttaa---cctgttctgaaatagtatcagtcgaaacactt |
1908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 31069 - 30980
Alignment:
| Q |
341 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcctgaccccgatgattttgatctcatccagttccgggaaagca |
430 |
Q |
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| T |
31069 |
ctcctaaaaaaggtagagggttagtccacaactttgatattgcatatccaaacctcgatgattttgaccttatccagtttcaggaaagca |
30980 |
T |
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