View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_high_1 (Length: 634)
Name: NF14387_high_1
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 20 - 624
Target Start/End: Original strand, 30849779 - 30850372
Alignment:
| Q |
20 |
tattgtcatatcaattaattttataatannnnnnnggtttcatccacacggatatcgtaattcaattctgnnnnnnnattaaacggaattgaaaccttgg |
119 |
Q |
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| T |
30849779 |
tattgtcatatcaattaattttataatatttttttggtttcatccacacggatatcggaattcaattct-tttttttattaaacggaattcaaacattgg |
30849877 |
T |
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| Q |
120 |
ttcgctaagttgtgaaaaataagttcatcatactatggtcaactctatatggtaattaatcttatactttaactgtcgnnnnnnngagttagaaactcgt |
219 |
Q |
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| T |
30849878 |
ttcactaagttgtgaaaaataagttcatcatactatggtcaactctatatggtaattaattttatactttatctgtcgttttttcgagttagaaactcgt |
30849977 |
T |
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| Q |
220 |
gtatgtgtatgtctgatatatagtgagttagaccaaatcacggtaccacatttttgtcaaagttaaacagtgtaggttttacaaaattatacaaatttgg |
319 |
Q |
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| T |
30849978 |
gtatgtgtatgtctgatatatagtgagttagacaaaatcacggtaccacatttttgtcaaagttaaaaagtgtaggttttacaaaattatacaaatttgg |
30850077 |
T |
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| Q |
320 |
tgagtttgtgtcaaactcacattgatataaaataatcactatatatttaatttcagttaataagataatagtgttatttatgtagtacataatttgttta |
419 |
Q |
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| T |
30850078 |
tgtgattttgtcaaactcacattgatataaaataatcactatatatttaatttcacat--tgatataaca--------tagatagtacataatttgttta |
30850167 |
T |
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| Q |
420 |
aagtttgtcataacaatcattattttacatgattggctatctatgttctacgactttgtgtgatgaatcccttctagcaagattacacaccttgatgaaa |
519 |
Q |
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| T |
30850168 |
aagtttgtcataacaatcattattttacatgattggctatctatgttctacgactttgtgtgatgaatcccttctagcaagattacacaccttgatgaaa |
30850267 |
T |
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| Q |
520 |
caagacaaaggttaacctagattcaagattacatatcttgtgtaatgaatctctaacactagatcctccatgcatgaaggtgttagtgcactgattagag |
619 |
Q |
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| T |
30850268 |
caagacaaaggttaacctagattcaagattacatatcttgtgtaatgaatctctaacactagatccgccatgcatgaaggtgttagtgcactgattagag |
30850367 |
T |
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