View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_high_13 (Length: 298)
Name: NF14387_high_13
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 28931890 - 28932170
Alignment:
| Q |
1 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaatttta |
100 |
Q |
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| T |
28931890 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaatttta |
28931989 |
T |
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| Q |
101 |
tttgtannnnnnnnctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttctt |
200 |
Q |
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| T |
28931990 |
tttgtattttttttctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttctt |
28932089 |
T |
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| Q |
201 |
acatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaa |
281 |
Q |
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| T |
28932090 |
acatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaa |
28932170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 10186746 - 10186783
Alignment:
| Q |
7 |
tgtggaaagaagctgaagatgcggcaaagaaggtataa |
44 |
Q |
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| T |
10186746 |
tgtggaaagaagctgaagctgctgcaaagaaggtataa |
10186783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 35122049 - 35121957
Alignment:
| Q |
189 |
aaaagtcttcttacatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaa |
281 |
Q |
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| T |
35122049 |
aaaagtcttctaacatgaccttttattgaagactgattttccgaatcatgaatcatatctcattatgaatcttaagatacataatcaataaaa |
35121957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35122259 - 35122173
Alignment:
| Q |
1 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaatt |
92 |
Q |
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||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||| ||||||||| |||||||| |||||| |
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| T |
35122259 |
atggcgtgtggaaagaagctgaagctgctgcaaagaaggtatagtaaa-----aatcaaatcaaaggttatcatcactcaaaattggtaatt |
35122173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 35122146 - 35122082
Alignment:
| Q |
115 |
ctgaagcactgtagtcttgttggaaaattg---gataaacaagtttgaggtatacataaagcaca |
176 |
Q |
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||||||||||||||||||| ||| |||||| |||||||| |||||||||||| | |||||||| |
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| T |
35122146 |
ctgaagcactgtagtcttgatgggaaattgctagataaacatgtttgaggtataaacaaagcaca |
35122082 |
T |
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