View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_high_17 (Length: 202)
Name: NF14387_high_17
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 47782186 - 47782355
Alignment:
| Q |
17 |
acatcgccgggtcctagtaataatcaatcaccttctcaacaaagtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccac |
116 |
Q |
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| T |
47782186 |
acatcgccgggtcctagtaataatcaatcaccttctcaacaaagtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccac |
47782285 |
T |
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| Q |
117 |
aatgtgatgattgtttgcttcaatctattgctggaatttcaagatttagcaataggagtagtgctagaat |
186 |
Q |
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| T |
47782286 |
aatgtgatgattgtttgcttcaatctattgctggaatttcaagatttagcaataggagtagtgctagaat |
47782355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 47788415 - 47788545
Alignment:
| Q |
59 |
agtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaa |
158 |
Q |
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| T |
47788415 |
agtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaa |
47788514 |
T |
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| Q |
159 |
ga---tttagcaataggagtagtgctagaat |
186 |
Q |
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| T |
47788515 |
gatgttgtagcaataggattggtgctagaat |
47788545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 47811730 - 47811820
Alignment:
| Q |
59 |
agtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctg |
149 |
Q |
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| T |
47811730 |
agtagtgatcaaacaataaatggtcttgttcagtgtacacctgatttgtcggtttcacagtgtgatgactgtttgaatgaatctattgctg |
47811820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 47778303 - 47778356
Alignment:
| Q |
69 |
aaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtg |
122 |
Q |
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| T |
47778303 |
aaactatatatggtcttgctcagtgtacacctgatttatctggtccacaatgtg |
47778356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 47745632 - 47745591
Alignment:
| Q |
67 |
tgaaacaatatatggtcttgttcagtgtacacctgacttgtc |
108 |
Q |
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| T |
47745632 |
tgaaaccatatatggtcttgtgcagtgtacacctgacttgtc |
47745591 |
T |
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