View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14387_high_3 (Length: 575)
Name: NF14387_high_3
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 123 - 560
Target Start/End: Complemental strand, 34131501 - 34131065
Alignment:
| Q |
123 |
gaatggggtgtttattgcttccaccaatgttgaccatttgaataaaaattacaatttaattattttgatatcttaagttaacattttttctaatataaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34131501 |
gaatggggtgtttattgcttccaccaatgttgaccatttgaataaaaatttcaatttaattattttgatatcttaagttaacattttttctaataaaaaa |
34131402 |
T |
|
| Q |
223 |
gataattttatcctcctcaaatttagaagaatgattccattcattttactattaaatccaacaattatccatcaatttgatccatcgattaacttgttta |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
34131401 |
gataattttatcctcctcaaatttagaagaatgattccattcattttactattaaatccaacaattatccatcaatttggttcatcggttaacttgttta |
34131302 |
T |
|
| Q |
323 |
gaaccaaactgatggatgatgatatagtttaatggcattttagttgattttaatagtttaagattggtgagagaataataatttaaagacggaattgatt |
422 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34131301 |
gaaccaaactaatgaatgatgatatagtttaatagcattttagttgattttaatagttgaagattggtgagagagtaataatttaaagacgaaattgatt |
34131202 |
T |
|
| Q |
423 |
gttcatgcatttcattttactccttccatccatccaaacataataaaggttccatacaattaaataataaataatctcgtaaggnnnnnnngtttcgttt |
522 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
34131201 |
gttcattcatttcattttactccttccatccatccaaacataataaaggttccatacaattaaataataaataatctcgtaatgttttttt-ttttgttt |
34131103 |
T |
|
| Q |
523 |
tgagaggaataatctcgcaatgttattaaaaccaatga |
560 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34131102 |
tgagaggaataatctcgtaatgttattaaaaccaatga |
34131065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 34131611 - 34131563
Alignment:
| Q |
13 |
ctttttgtgtatgcaagtggagaggtagtgcattgctaactatacaaca |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131611 |
ctttttgtgtatgcaagtggagaggtagtgcattgctaactatacaaca |
34131563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University