View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_high_4 (Length: 555)
Name: NF14387_high_4
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 9971479 - 9970940
Alignment:
| Q |
1 |
aacaaaaattgaacataaacactactcaagtagtaaagcgataacaaaatcaaaggatctttccacagttaaacgaatgaacaactaaaacaacactaga |
100 |
Q |
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| T |
9971479 |
aacaaaaattgaacataaacactactcaagtagtaaagcgataacaaaatcaaaggatctttccacagtgaaacaaatgaacaactaaaacaacactaga |
9971380 |
T |
|
| Q |
101 |
aacccatctaaccttttatctcaaacatccaaccccaaccaaacaggaggaagattaggaacagaacccaacagtcaatcaaatc---caagacaaatcc |
197 |
Q |
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| T |
9971379 |
tatccatctaaccttttatctcaaacatccaaccccaaccaaactggaggaagattaggaacagaatccaacagtcaatcaaataattcaagacaaatcc |
9971280 |
T |
|
| Q |
198 |
gtcacataataccatcaatgtccacatataataagtttatgatctcactcatataaagaacatgtacgtgtgactaagacatttttctaaaaatcatttt |
297 |
Q |
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| T |
9971279 |
gtcacataacaccatagatgcccacatataatgagtttatgatctcactcatataaagaacatgtaagtgtgactaagacgtttttctaaaaatcatttc |
9971180 |
T |
|
| Q |
298 |
caaaagattaatttaataataatcaccaagtgaagcacaaatgtctcctaccctacatattgtctcaacatattgttcagctaagaatcattttgttttc |
397 |
Q |
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| T |
9971179 |
caaacgatgaatttaataatattcaccaagtgaagcacaaatgtctcctaccctacatattgtctcaacatattgttcagctaagaatcattttgttttc |
9971080 |
T |
|
| Q |
398 |
ctaaaataacaatttggtataatattattcatttaatcattcaatatcagtctatacctaagctacaaaattgtcatgttgttaacttcttggagagacc |
497 |
Q |
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| T |
9971079 |
ctaaaataacaatttggtataatattattcatttcatcattcaatatcagtctatacctaagctacaaaattgtcatgttgttaacttcttggagagacc |
9970980 |
T |
|
| Q |
498 |
accaataaaatttatattctaatagcatggccggcttggc |
537 |
Q |
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| T |
9970979 |
accaataaaatttatattctaatagcatggccggcttggc |
9970940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 18102013 - 18101939
Alignment:
| Q |
188 |
agacaaatccgtcacataataccatcaatgtccacatataataagtttatgatctcactcatataaagaacatgt |
262 |
Q |
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| T |
18102013 |
agacaaatctgtcataaaacaccatcgacgtcaacatataatgagtttatgatccccctcatagaaagaacatgt |
18101939 |
T |
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