View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_high_9 (Length: 391)
Name: NF14387_high_9
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 6088626 - 6088900
Alignment:
| Q |
21 |
ttgagtggtaattaaaatgtaccatcactactggttaatcttaattacctcttgagagcatcttcattggtttctccatttgtcagtggctcaaagtggc |
120 |
Q |
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| T |
6088626 |
ttgagtggtaattaaaatgtaccgtctctactaatttatcttaattacctcttgagagcttcttcattggtttctccatttgtcagtggctcaaagtgac |
6088725 |
T |
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| Q |
121 |
cattttccaaattgactctagagaccggtttctttaacaagttctcgccaatttggcacagtttcttcaagttctcctctgtagcaatgtcaactgaaga |
220 |
Q |
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| T |
6088726 |
cattttctaaattgactctagagaccggtttctttaataaattttcaccaatttggcacagtttcttcaagttctcctctgtagcaatgtcaactgaaga |
6088825 |
T |
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| Q |
221 |
atctattcctgtcaatgtatcatcctgcattttgtggaatttgttaaacaaattaatcacttatccttgatactc |
295 |
Q |
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| T |
6088826 |
atcgattcctgtcaatgtatcatcctgcattttgttgaatttgttaaacaaattaatcacttatccttgatactc |
6088900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 46678189 - 46678056
Alignment:
| Q |
120 |
ccattttccaaattgactctagagaccggtttctttaacaagttctcgccaatttggcacagtttcttcaagttctcctctgtagcaatgtcaactgaag |
219 |
Q |
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||||| || |||||||| |||| || |||||||| ||||| | || ||||||||||| ||||| | || ||||| | ||| | ||| ||||| |||| |
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| T |
46678189 |
ccattctctaaattgaccttagatactggtttcttcaacaatctgtcaccaatttggcaaagtttttctaaattctcttttgtggaaatatcaaccgaag |
46678090 |
T |
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| Q |
220 |
aatctattcctgtcaatgtatcatcctgcatttt |
253 |
Q |
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| T |
46678089 |
aatctgtaccggtcaatgtatcatcctgcatttt |
46678056 |
T |
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