View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_10 (Length: 383)
Name: NF14387_low_10
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 49289450 - 49289782
Alignment:
| Q |
17 |
caaaggactt-gtcttgatttgttccgtatgcatgcatgcaatcaatcaatgcatggatgaagaatataatcgtttgtactagctagtagtaaaagtgga |
115 |
Q |
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| T |
49289450 |
caaaggactttgtcttgatttgttccgtatgcatgcatgcaatcaatcaatgcatggatgaagaatataatcgtttgtactagctagtagtaaaagtgga |
49289549 |
T |
|
| Q |
116 |
cttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagccttaa |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49289550 |
cttaattgatcaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttcttttccaacaacaagccttaa |
49289649 |
T |
|
| Q |
216 |
tttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattcct |
315 |
Q |
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| T |
49289650 |
tttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattcct |
49289749 |
T |
|
| Q |
316 |
cacatatcaaccaacattttccacatttgacat |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49289750 |
cacatatcaaccaacattttccacatttgacat |
49289782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 49296401 - 49296733
Alignment:
| Q |
17 |
caaaggactt-gtcttgatttgttccgtatgcatgcatgcaatcaatcaatgcatggatgaagaatataatcgtttgtactagctagtagtaaaagtgga |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296401 |
caaaggactttgtcttgatttgttccgtatgcatgcatgcaatcaatcaatgcatggatgaagaatataatcgtttgtactagctagtagtaaaagtgga |
49296500 |
T |
|
| Q |
116 |
cttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagccttaa |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49296501 |
cttaattgatcaatcactttcaatgattttgaaagtgacccaaacatctaatcgacgattctccacttttctacttttcttttccaacaacaagccttaa |
49296600 |
T |
|
| Q |
216 |
tttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattcct |
315 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296601 |
tttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattcct |
49296700 |
T |
|
| Q |
316 |
cacatatcaaccaacattttccacatttgacat |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49296701 |
cacatatcaaccaacattttccacatttgacat |
49296733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 114 - 348
Target Start/End: Original strand, 49303232 - 49303463
Alignment:
| Q |
114 |
gacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagcctt |
213 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49303232 |
gacttaattgatcaatcactttcaacgattttgaaaatgacccaaatatctaatggacgattctccacttttctacttttctttcccaac---aagcctt |
49303328 |
T |
|
| Q |
214 |
aatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattc |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303329 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacacattc |
49303428 |
T |
|
| Q |
314 |
ctcacatatcaaccaacattttccacatttgacat |
348 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49303429 |
ctcacatatcaaccaacattttccacatttgacat |
49303463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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