View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_11 (Length: 359)
Name: NF14387_low_11
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 11227995 - 11228335
Alignment:
| Q |
1 |
atgttataaatattaatttatttggtggttatcttgttacaacatattgactaacctttaattgtttctattggtagatacatgtaccaaagaaattata |
100 |
Q |
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| T |
11227995 |
atgttataaatattaatttatttggtggttatcttgttacaacatattgactaacctttaattgtctttattggtagatacatgtaccaaagaaattata |
11228094 |
T |
|
| Q |
101 |
actcgaaaaatggtagcaactgaggtttggcatttggagaagacnnnnnnnnttattgtggaactcaacaaaagggggcaaggagacgataatggtacaa |
200 |
Q |
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| T |
11228095 |
actcgaaaaatggtagcaactgaggtttggcatttggagaagacaaaaaaa-ttattgtggggctcaacaaaaggggacaaggagacgataatggtacta |
11228193 |
T |
|
| Q |
201 |
acttacttgtgaggttcttaggccaaatcgctaaaaagtcagcctattgtcctatatcagttgaaagatgggatgagatgtccgaaaaatgtagtataga |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11228194 |
acttacttgtgaggttcttaggccaaattgctaaaaaatcagcctattgtcctatatcagttgaaaggtgggatgagatgtccgaaaaatgtagtataga |
11228293 |
T |
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| Q |
301 |
tcaatggcagtgtattgaggttattattttgactttgttaat |
342 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11228294 |
tcaatggcagtgtatcgaggttattattttgactttgttaat |
11228335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 106 - 342
Target Start/End: Original strand, 13551622 - 13551858
Alignment:
| Q |
106 |
aaaaatggtagcaactgaggtttggcatttggagaagacnnnnnnnnttattgtggaactcaacaaaagggggcaaggagacgataatggtacaaactta |
205 |
Q |
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| T |
13551622 |
aaaaatggtagcaactgaggtttggcatttggagaagacaaaaaaaattactgtggaactcaacaaaaggggacaaggagacgataatggtacaaactta |
13551721 |
T |
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| Q |
206 |
cttgtgaggttcttaggccaaatcgctaaaaagtcagcctattgtcctatatcagttgaaagatgggatgagatgtccgaaaaatgtagtatagatcaat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13551722 |
cttgtgaggttcttaggccaaatcgctaaaaagtcagtctattgtcctatatcagttgaaagatgggatgagatgtccgaaaaatgtagtatagatcaat |
13551821 |
T |
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| Q |
306 |
ggcagtgtattgaggttattattttgactttgttaat |
342 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
13551822 |
ggcagtgtattgaggtttatattttgactttgttaat |
13551858 |
T |
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