View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_12 (Length: 319)
Name: NF14387_low_12
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 49290095 - 49289804
Alignment:
| Q |
18 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290095 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
49289996 |
T |
|
| Q |
118 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289995 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
49289896 |
T |
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| Q |
218 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49289895 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49289804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 49297046 - 49296755
Alignment:
| Q |
18 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297046 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
49296947 |
T |
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| Q |
118 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
217 |
Q |
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| T |
49296946 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
49296847 |
T |
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| Q |
218 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49296846 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49296755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 49303776 - 49303485
Alignment:
| Q |
18 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303776 |
caaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaa |
49303677 |
T |
|
| Q |
118 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303676 |
cagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcac |
49303577 |
T |
|
| Q |
218 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49303576 |
accaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49303485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 298
Target Start/End: Original strand, 6567878 - 6568113
Alignment:
| Q |
60 |
ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg |
159 |
Q |
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||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||| || | | || || ||| ||| ||| |
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| T |
6567878 |
ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg |
6567974 |
T |
|
| Q |
160 |
cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca |
259 |
Q |
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|||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| |||||| |
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| T |
6567975 |
cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca |
6568074 |
T |
|
| Q |
260 |
acatgaactcttgctgaatatcaccactggcctttctga |
298 |
Q |
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||| ||||||||||||||||||||||| ||| ||||| |
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| T |
6568075 |
acaactactcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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