View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_13 (Length: 314)
Name: NF14387_low_13
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 42684693 - 42684406
Alignment:
| Q |
23 |
cgagtcaacttgatttgaattatgtatagccatgactcgaatcatgcactttcacaaaaaa--tagtttatacacttatgctataagcttccaattgagc |
120 |
Q |
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| T |
42684693 |
cgagtcaacttgatttgaattatgcatagccatgactcgaatcatgcactttcacaaaaaaaatagtttatacacttatgctataagcttccaattgagc |
42684594 |
T |
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| Q |
121 |
tgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatccca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42684593 |
tgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatccca |
42684494 |
T |
|
| Q |
221 |
agacaagtatctgcataaaatcaaatccgttaaataaatacgagctacaaagtaaataaaagaagttagaaatggaattaccctttgc |
308 |
Q |
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| T |
42684493 |
agacaagtatctgcataaaatcaaatccgttaaataaatacgagctacaaagtaaataaaagaagttggaaatggaattaccctttgc |
42684406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 27119288 - 27119210
Alignment:
| Q |
153 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
231 |
Q |
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| T |
27119288 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
27119210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 21185690 - 21185612
Alignment:
| Q |
153 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
231 |
Q |
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| T |
21185690 |
acctgcctattagggtctttggatctttcagcagacaaaaacgtaatagccatgaaataatcatcccaagacaagtatc |
21185612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 2482780 - 2482742
Alignment:
| Q |
96 |
ttatgctataagcttccaattgagctgtttatccaaaca |
134 |
Q |
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| T |
2482780 |
ttatgctataagcttcaaattaagctgtttatccaaaca |
2482742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 37138283 - 37138242
Alignment:
| Q |
93 |
cacttatgctataagcttccaattgagctgtttatccaaaca |
134 |
Q |
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||||||||||||||||||| |||| || |||||||||||||| |
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| T |
37138283 |
cacttatgctataagcttcaaattaagttgtttatccaaaca |
37138242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 4920899 - 4920940
Alignment:
| Q |
93 |
cacttatgctataagcttccaattgagctgtttatccaaaca |
134 |
Q |
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||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
4920899 |
cacttatgctataagctgcaaattaagctgtttatccaaaca |
4920940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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