View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_14 (Length: 301)
Name: NF14387_low_14
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 26005569 - 26005661
Alignment:
| Q |
119 |
gattacattaatacgaagcgtttctcctctagaagtatctacaacaagcttagtttcagttgcagcatgaagatacaaccctaaaacagcacc |
211 |
Q |
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| T |
26005569 |
gattacattaatacgaagcgtttctcctctagaagtatctacaacaagcttagtttcagttgcagcatgaagatacaaccctaaaacagcacc |
26005661 |
T |
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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 26005470 - 26005524
Alignment:
| Q |
16 |
ctataagcagcaaattaacatcacaaatacatagataatgaacacaatgtaatac |
70 |
Q |
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| T |
26005470 |
ctataagcagcaaattaacatcacaaatacatagataatgaacacaatgtaatac |
26005524 |
T |
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