View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_2 (Length: 607)
Name: NF14387_low_2
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Original strand, 3984026 - 3984600
Alignment:
| Q |
20 |
gtactacactcttttcgaaggctaaataatctgttttttactcaaagtttaaaatattcttattgtagtagaagtttggtagaatgattaactaatatac |
119 |
Q |
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| T |
3984026 |
gtactacactcttttcgaaggctaaataatctgttttttactcaaagtttaaaatattcttattgtagtagaagtttggtagaatgattaactaatatac |
3984125 |
T |
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| Q |
120 |
aataaattgatataccaatacataaggatattattggaaacaagtagttaatactctttttgtcaaaacaaagtagtcaatgttctcttgatatttggag |
219 |
Q |
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| T |
3984126 |
aataaattaatataccaatacataaggatattattggaaacaagtagttaatactctttttgtcaaaacaaagtagtcaatattctcttgatatttggag |
3984225 |
T |
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| Q |
220 |
tgacaaataatttgagacaaaccaatattccaaataggacaggtaaaataagacagagaaagtgttaccaatacccaaatatattctgagaatatcttga |
319 |
Q |
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| T |
3984226 |
tgacaaataatttgagacaaaccaatattccaaataggacaggtaaaataagacagagaaagtgttaccaatacccaaatatatgttgagaatatcttga |
3984325 |
T |
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| Q |
320 |
atgatgaactttgatttcctcccttacagtannnnnnnnnnnnnnnnnnnagttacagtagattatatctctttgattataccaattacatcagtaactt |
419 |
Q |
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| T |
3984326 |
atgatgaactttgatttactcccttacagtatctatctctctctttttttagttacagtagattatatctctttgattataccaattacatcagtaactt |
3984425 |
T |
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| Q |
420 |
tgatttacttcctttccattcttttgaagatattattatataaagctgtacagaattctatatttatctaaaattatttaatatcattgagataagtgtt |
519 |
Q |
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| T |
3984426 |
tgatttacttcctttccattcttttgaagatattattatataaagctgtacagaattctatattaatctaaaattatttaatatcattgagataagtgtt |
3984525 |
T |
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| Q |
520 |
tgtgtctgcacaaagacaaacatgtaatgtgtgtatgtctttcttttggtgtgtgattacatgtatatacctatg |
594 |
Q |
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| T |
3984526 |
tgtgtctgcacaaagacaaacatgtaatgtgtgcatgtttttcttttggtgtgtgattacatgtatatacctatg |
3984600 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 24089557 - 24089504
Alignment:
| Q |
101 |
gaatgattaactaatatacaataaattgatataccaatacataaggatattatt |
154 |
Q |
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| T |
24089557 |
gaatgagtaattaatatacaataaattgatataccaataaataaagttattatt |
24089504 |
T |
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