View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14387_low_5 (Length: 529)
Name: NF14387_low_5
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 36417812 - 36418330
Alignment:
| Q |
1 |
cttttgtcatttggatattctgtgtgccaatccagactgaagtgttttatcagcagttctaaccatgttttgattaagttggtctatcaattttatacaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36417812 |
ctttggtcatttggatattctgtgtgccaatccagactgaagtgttttatcagcagttctaaccatgttttgattaagttggtctatcaatgttatacaa |
36417911 |
T |
|
| Q |
101 |
acaatctcttcaaatttccgtagcaactgctaataattgttgttgttgttgagcgaccattacacgtacaacactagaaaaatgtaaaatataagannnn |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417912 |
acaatctcttcaaatttccttagcaactgctaataattgttgttgttgttgagcgaccattacacgtacaacactagaaaaatgtaaaatataagatttt |
36418011 |
T |
|
| Q |
201 |
nnnggtgagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccacaacc |
300 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36418012 |
tttggagaaccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccgcaacc |
36418111 |
T |
|
| Q |
301 |
aaaccaagattcctctggggaagagaacgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418112 |
aaaccaagattcctctggggaagagaatgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaat |
36418211 |
T |
|
| Q |
401 |
tgtggtcttgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatcc |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418212 |
tgtgatcttgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatcc |
36418311 |
T |
|
| Q |
501 |
ttagcctctttatattcat |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36418312 |
ttagcctctttatattcat |
36418330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 36427788 - 36428310
Alignment:
| Q |
1 |
cttttgtcatttggatattct--gtgtgccaatccagactgaagtgttttatcagcagttctaaccatgttttgattaagttg--gtctatcaattttat |
96 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
36427788 |
cttttgtcatttggatattctctgtgtgccaatccagactgaagtgttttatcagcagttctaaccatgttttgattaagtttttgtctatcaatgttat |
36427887 |
T |
|
| Q |
97 |
acaaacaatctcttcaaatttccgtagcaactgctaataattgttgttgttgttgagcgaccattacacgtacaacactagaaaaatgtaaaatataaga |
196 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427888 |
acaaacaatctctccaaatttccttagcaactgcaaataattgttgttgttgttgagagaatattacacgtacaacactagaaaaatgtaaaatataaga |
36427987 |
T |
|
| Q |
197 |
nnnnnnnggtgagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccac |
296 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36427988 |
ttttttttgagagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccgc |
36428087 |
T |
|
| Q |
297 |
aaccaaaccaagattcctctggggaagagaacgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaag |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36428088 |
aaccaaaccaagattcctctggggaagagaatgatacccaaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaag |
36428187 |
T |
|
| Q |
397 |
aaattgtggtcttgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaat |
496 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36428188 |
aaattgtggtcatgagaataagcttggacaaggtggatttggttctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaat |
36428287 |
T |
|
| Q |
497 |
atccttagcctctttatattcat |
519 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36428288 |
atccttagcctctttatattcat |
36428310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 207 - 519
Target Start/End: Original strand, 36374893 - 36375204
Alignment:
| Q |
207 |
gagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccacaaccaaacca |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
36374893 |
gagccaaaaagaaatatacct-atcaaaatttgcaagttgattgaaatcttacctcgtgccatttgtaacttcagataaaatgatgcggcaatttaacca |
36374991 |
T |
|
| Q |
307 |
agattcctctggggaagagaacgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggt |
406 |
Q |
| |
|
||||||||||| |||||||| | | | ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||| ||| | || |
|
|
| T |
36374992 |
agattcctctgaagaagagaatggtgctcaaagcaacacacatccaaatcttccctttttcagctttaaaacgattataacagctacaagagattttagt |
36375091 |
T |
|
| Q |
407 |
cttgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcc |
506 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375092 |
catcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcc |
36375191 |
T |
|
| Q |
507 |
tctttatattcat |
519 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36375192 |
tctttatattcat |
36375204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 207 - 492
Target Start/End: Original strand, 36434528 - 36434812
Alignment:
| Q |
207 |
gagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccacaaccaaacca |
306 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
36434528 |
gagccaaaaagaaatacaccct-tcaaaatgtttaagttgattgaaatcttacctcatgccatttgtaacttcagataaaatggtgcggcaattaaacca |
36434626 |
T |
|
| Q |
307 |
agattcctctggggaagagaacgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggt |
406 |
Q |
| |
|
|||||||| ||| ||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36434627 |
agattcctttggagaaaagaacggtgttcaaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggt |
36434726 |
T |
|
| Q |
407 |
cttgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtga |
492 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| |||||| |
|
|
| T |
36434727 |
catgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgagaccctacattgagctactattgcaagaagtga |
36434812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 207 - 519
Target Start/End: Original strand, 36388606 - 36388927
Alignment:
| Q |
207 |
gagccaaaaagaaatataccttatcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaa------tgatgccacaacc |
300 |
Q |
| |
|
|||||||||||||||||||| | | ||||||| | |||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| ||| |
|
|
| T |
36388606 |
gagccaaaaagaaatatacccttt-aaaatgtgttagttgattgaaatcttacctcatgccatttgtaacttcagatgaaaataaattgatgatgcaatt |
36388704 |
T |
|
| Q |
301 |
aaaccaagattcctctggggaagagaacgatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaat |
400 |
Q |
| |
|
|||||||||||||||||| |||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36388705 |
aaaccaagattcctctggagaagagaatattgctcaaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaat |
36388804 |
T |
|
| Q |
401 |
tgtggtcttgagaataagcttggacaaggtggatttggctctgtctataagg----taagtgaaactctacattgagatactcatgcaaaaagtgacaat |
496 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| | ||| |||||| | |
|
|
| T |
36388805 |
tgtggtcatgagaataagcttggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgaatcaagaagtgaatac |
36388904 |
T |
|
| Q |
497 |
atccttagcctctttatattcat |
519 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
36388905 |
atccttcacctctttatattcat |
36388927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 253 - 519
Target Start/End: Original strand, 36405979 - 36406245
Alignment:
| Q |
253 |
atcttaccttatgtcatttgtaacttcagataaaatgatgccacaaccaaaccaagattcctctggggaagagaacgatacccaaagcaacacgcatcca |
352 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| ||| |||||| || ||||| | |||||||| | | | | || ||||| |||||| |
|
|
| T |
36405979 |
atcttacctcatgtcatttgtaactttagataaaatgatgcggcaaataaaccatgactcctcagtagaagagaatggtgctccaaacaacagacatcca |
36406078 |
T |
|
| Q |
353 |
aatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcttgagaataagcttggacaaggtggatttggctctgtctataagg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36406079 |
aatctaccctttttcagctttaaaacgataatgacagctacaaaaaattgtgatcataagaataagcttggacaaggtggatttggctctgtctacaagg |
36406178 |
T |
|
| Q |
453 |
taagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctttatattcat |
519 |
Q |
| |
|
| |||||||||||||||| || |||| |||||| ||||||||| ||| | ||||||||||||||| |
|
|
| T |
36406179 |
tgagtgaaactctacattaagctactgatgcaagaagtgacaacatcagtcacctctttatattcat |
36406245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 484
Target Start/End: Original strand, 36398221 - 36398476
Alignment:
| Q |
229 |
atcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccacaaccaaaccaagattcctctggggaagagaac |
328 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||||| |||| |||||| |||||| ||||| |||||| ||| |||| |||||| ||||| |||||||| |
|
|
| T |
36398221 |
atcaaaatgtgtaagtagattggagtcttaccgcatgttatttgtgacttcaaataaagtgatgcagcaatcaaaagaagattactctgcagaagagaat |
36398320 |
T |
|
| Q |
329 |
gatacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcttgagaataagcttggacaag |
428 |
Q |
| |
|
||| | ||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| | ||||||||||||| ||| |
|
|
| T |
36398321 |
gatgctcaaagcaccacacatccaaatctaccctttttcagccttaaaacgataatgtcagctacaagatattgcagtcatcagaataagcttgggaaag |
36398420 |
T |
|
| Q |
429 |
gtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgca |
484 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
36398421 |
gtggatttggctctgtttataaggtaagtaaacctctacattgagctactcatgca |
36398476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 230 - 519
Target Start/End: Original strand, 36369680 - 36369970
Alignment:
| Q |
230 |
tcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccacaaccaaaccaagattcctctggggaagagaacg |
329 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||| || | | ||||||||||||||||||| ||| ||| |||||||| |||| ||||| ||||| | |
|
|
| T |
36369680 |
tcaaaatgtgtaaattgattaaaatcctacctcattccttctgtaacttcagataaaatgctgcatcaatcaaaccaatattcgtctgg---agagattg |
36369776 |
T |
|
| Q |
330 |
atacccaaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcttgagaataagcttggacaagg |
429 |
Q |
| |
|
| | |||||| |||| ||| |||||| || || |||||||||| ||| || || |||||||||| ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
36369777 |
gtgctcaaagctacacacattcaaatcatccattcttcagctttagaacaattataacagctacaacaaattttagtcatgagaataagcttggacaagg |
36369876 |
T |
|
| Q |
430 |
tggatttggctctgtctataagg----taagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctttatattcat |
519 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||| |||| || ||| |||||| || |||||| |||||||||||||| |
|
|
| T |
36369877 |
tggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcatctctttatattcat |
36369970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 36405482 - 36405620
Alignment:
| Q |
1 |
cttttgtcatttggatat--tctgtgtgccaatccagactgaagtgttttatcagcagttctaaccatgttttgattaagtt--ggtctatcaattttat |
96 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||||||| ||||||||||| ||| |
|
|
| T |
36405482 |
cttttgtcatttggatataatgtgtgtgccaatccagact-aagtattttattagcagttcgaaccaagttttg-ttaagttttggtctatcaatgttag |
36405579 |
T |
|
| Q |
97 |
acaaacaatctcttcaaatttccgtagcaactgctaataat |
137 |
Q |
| |
|
|||||||||| || ||||||||| || |||||||||||||| |
|
|
| T |
36405580 |
acaaacaatcactccaaatttccttatcaactgctaataat |
36405620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University