View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14387_low_6 (Length: 507)
Name: NF14387_low_6
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14387_low_6 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 6407 - 5921
Alignment:
| Q |
8 |
agattattcttatttacatattctgataagaaaaatggtaat--gcacaatgacgtatgcttatttcgataaaagcatatagtcactgagatagctgtat |
105 |
Q |
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| T |
6407 |
agattattcttatttacatattctgacaagaaaaatggtaatatgtacaatgacgcatgcttatttcgataaaagcatatagtcactgagatagctgtgt |
6308 |
T |
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| Q |
106 |
attcaatcttaattctcaagtgctaaactaaactctcaaattgattaatggaaagggggagatatctatgaacgtgaataagttacagacaataatagcc |
205 |
Q |
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| T |
6307 |
attcaatcttaattctcaagtgctaaactaaactctcaaattgattaatggaaaaggggagatatctatgaacgtgaataagttacagacaataatagcc |
6208 |
T |
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| Q |
206 |
catttagacatcatatcttgacttaaattcttaacataacgagtatattaatgtttacacttgcattgtttttactttagtaaattcttggcctaataga |
305 |
Q |
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| T |
6207 |
-atttagacatcatatcttgacttaaattcttaacataacgagtatattaatgtttacacttacattgtttttaatttagtaaattcttggcctaataga |
6109 |
T |
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| Q |
306 |
tacatgcctagtaccaaaacttgatttgaatcaaatttaactgcatcatatcatttgtatgataacgttattttaacattatcatacaaatgatatactg |
405 |
Q |
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| T |
6108 |
tacatgcctagtcccaaaacttgatttgaatcaaatttaactgcatcatatcatttgtatgataacgttaatttaacattatcatacaaatgatataatg |
6009 |
T |
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| Q |
406 |
caattaaatttggaaggtcatcatcaaaatacttgctaccactatcatgcgatttgatgcacggtttgttaatttaccattaccgtta |
493 |
Q |
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| T |
6008 |
caattaaatttggaaggtcagaatcaaaataattgataccactatcatgcgatttgatgcaaggtttgttaatttaccattacagtta |
5921 |
T |
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Target: scaffold0204; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 5997 - 6077
Alignment:
| Q |
337 |
caaatttaactgcatcatatcatttgtatgataacgttattttaacattatcatacaaatgatatactgcaattaaatttg |
417 |
Q |
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| T |
5997 |
caaatttaattgcattatatcatttgtatgataatgttaaattaacgttatcatacaaatgatatgatgcagttaaatttg |
6077 |
T |
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