View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14387_low_7 (Length: 466)

Name: NF14387_low_7
Description: NF14387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14387_low_7
NF14387_low_7
[»] chr7 (1 HSPs)
chr7 (193-450)||(25527977-25528227)
[»] chr4 (3 HSPs)
chr4 (202-251)||(231998-232047)
chr4 (30-81)||(231655-231706)
chr4 (193-230)||(46707465-46707502)
[»] chr5 (1 HSPs)
chr5 (206-251)||(16689643-16689688)
[»] chr3 (1 HSPs)
chr3 (193-230)||(25329898-25329935)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 193 - 450
Target Start/End: Complemental strand, 25528227 - 25527977
Alignment:
Q  193 tataatgcagagagactatgataagatcaatgttcctcatttatataatcgttaaaattcttcggtggaaaactcttttccattcccacgctaaaatgcc 292  Q
    ||||||||| ||| |||||||||| |||||| || |||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  25528227 tataatgcaaagaaactatgataaaatcaatatttctcatttatataatagttaaaattctcgtgtggaaaactcttttccattcccacactaaaatgcc 25528128  T
Q  293 actgaagagagtatgtaatacaagtcataattagtatgggtcaaaacaagcaagtcataatgaaaaggaaaaagatacacacttcatcttctcaaactaa 392  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||| | | ||||||||||||||||||||||    
T  25528127 actgaagtgagtatgaaatacaagtcataattagtatgggtcaaaacaagcaagtcataatg-------aaaataaatacacttcatcttctcaaactaa 25528035  T
Q  393 actaaacaggtttaattaagaaaggtgttaagacaattctgctgggggtagtatatat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25528034 actaaacaggtttaattaagaaaggtgttaagacaattctgctggtggtagtatatat 25527977  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 231998 - 232047
Alignment:
Q  202 gagagactatgataagatcaatgttcctcatttatataatcgttaaaatt 251  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  231998 gagagactatgataagatcaatgttcctcatttatctaatggttaaaatt 232047  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 231706 - 231655
Alignment:
Q  30 agaggcttcagtgaagaagaagcccaatatatgttaatggaagagttgcatg 81  Q
    ||||||||||| |||  |||||||||| || |||||||||||||||||||||    
T  231706 agaggcttcagcgaaagagaagcccaaaatgtgttaatggaagagttgcatg 231655  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 46707502 - 46707465
Alignment:
Q  193 tataatgcagagagactatgataagatcaatgttcctc 230  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  46707502 tataatgcagaaagactatgataaaatcaatgttcctc 46707465  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 16689688 - 16689643
Alignment:
Q  206 gactatgataagatcaatgttcctcatttatataatcgttaaaatt 251  Q
    |||||||||||||| |||||| ||||||||| |||| |||||||||    
T  16689688 gactatgataagattaatgtttctcatttatctaatagttaaaatt 16689643  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 25329898 - 25329935
Alignment:
Q  193 tataatgcagagagactatgataagatcaatgttcctc 230  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  25329898 tataatgtagagagactatgataaaatcaatgttcctc 25329935  T

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