View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14388_low_1 (Length: 256)
Name: NF14388_low_1
Description: NF14388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14388_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39028832 - 39028592
Alignment:
| Q |
1 |
ctggaggagaatcaagcaatcctgaaccattaagtggaaagaagtttttggttgttgatgatagtcctatgctgagaaagatttgtatggctactttgag |
100 |
Q |
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| T |
39028832 |
ctggaggagaatcaagcaatcctgaaccattaagtggaaagaagtttttggttgttgatgatagtcctatgctgagaaagatttgtatggctactttgag |
39028733 |
T |
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| Q |
101 |
atctcttggtgtgactactgttgaccaatgtgagaatggtgaagaggctgtgagaactgttcaagagggtttaacaaaggattttactaatcctccttat |
200 |
Q |
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| T |
39028732 |
atctcttggtgtgactactattgaccaatgtgagaatggtgaagaggctgtgagaactgttcaagagggtttaaccaaggattttactaatcctccttat |
39028633 |
T |
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| Q |
201 |
gattatatcttaatggattgtcaggtaattaatgattatac |
241 |
Q |
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| T |
39028632 |
gattatatcttaatggattgtcaggtaattaatgattatac |
39028592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 40895761 - 40895721
Alignment:
| Q |
187 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
227 |
Q |
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| T |
40895761 |
ctaatcctccttatgattacatcttaatggattgccaggta |
40895721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 6996067 - 6996027
Alignment:
| Q |
187 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
227 |
Q |
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| T |
6996067 |
ctaatcctccttatgattacatcttaatggattgccaggta |
6996027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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