View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_high_12 (Length: 375)
Name: NF14389_high_12
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 174 - 365
Target Start/End: Original strand, 38951865 - 38952057
Alignment:
| Q |
174 |
taaccaaacaaagagcatgattgtctgcattgcaattcttgcctacgtgctattagctggaatcagtggtgaggggaccatggctttatttcttgtcgtc |
273 |
Q |
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| T |
38951865 |
taaccaaacaaagagcatgattgtctgcattgcaattcttgcctacgtgctattagctggaatcagtggtgaggggaccatggctttatttcttgtcgtc |
38951964 |
T |
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| Q |
274 |
cacgcttcttccttataaattatgcacagcatgc-aaagattcatgaagaaagattttcaattagctacttcatttaacaatcacggtctctg |
365 |
Q |
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| T |
38951965 |
cacgcttcttccttataaattatgcacagcatgcaaaagattcatgaagaaagattttcaattagctacttcatttaacaatcacggtctctg |
38952057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 38951683 - 38951840
Alignment:
| Q |
18 |
tgttgtttgtgatgaggagaacctcaatgagaactggtaatttata-gggaagtgagaatggtgatgaatggacacgttaaagcaggtggggtgctgagc |
116 |
Q |
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| T |
38951683 |
tgttgtttgtgatgaggagaacctcaatgagaactggtaatttataagggaagtgagaatggtgatgaatggacacgttaaagcaggtggggtgctgagc |
38951782 |
T |
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| Q |
117 |
attagacattcttcagcttgcatggctatggaagccttgtgtgttacacatatgctct |
174 |
Q |
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| T |
38951783 |
attagacattcttcagcttgcatggctatggaagccttgtgtgttacacatatgctct |
38951840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 38944291 - 38944337
Alignment:
| Q |
111 |
ctgagcattagacattcttcagcttgcatggctatggaagccttgtg |
157 |
Q |
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| T |
38944291 |
ctgagcattagacattcttcatcgtgcatggctatgaaagccatgtg |
38944337 |
T |
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