View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_high_15 (Length: 315)

Name: NF14389_high_15
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_high_15
NF14389_high_15
[»] chr4 (6 HSPs)
chr4 (1-307)||(30768855-30769161)
chr4 (128-204)||(29195095-29195171)
chr4 (128-191)||(5795422-5795485)
chr4 (140-204)||(46295109-46295174)
chr4 (153-204)||(32992637-32992689)
chr4 (140-184)||(39030133-39030177)
[»] chr8 (5 HSPs)
chr8 (126-191)||(26688863-26688928)
chr8 (128-191)||(11793534-11793597)
chr8 (128-191)||(11979252-11979315)
chr8 (128-178)||(22268959-22269009)
chr8 (128-204)||(968362-968439)
[»] chr7 (9 HSPs)
chr7 (128-204)||(22760863-22760940)
chr7 (128-191)||(7801180-7801243)
chr7 (128-178)||(48125200-48125250)
chr7 (128-191)||(5273603-5273666)
chr7 (128-191)||(5579247-5579310)
chr7 (145-183)||(46279031-46279069)
chr7 (146-191)||(3968655-3968700)
chr7 (126-191)||(31835190-31835255)
chr7 (39-86)||(654705-654750)
[»] chr5 (5 HSPs)
chr5 (128-204)||(16773807-16773884)
chr5 (127-183)||(19373238-19373294)
chr5 (140-204)||(1410659-1410723)
chr5 (55-87)||(37397806-37397838)
chr5 (54-86)||(39229207-39229239)
[»] chr1 (8 HSPs)
chr1 (127-178)||(952510-952561)
chr1 (140-191)||(4824983-4825034)
chr1 (128-183)||(37046985-37047040)
chr1 (128-176)||(34228874-34228922)
chr1 (128-183)||(15581162-15581217)
chr1 (128-173)||(1690108-1690153)
chr1 (127-191)||(19940885-19940949)
chr1 (127-183)||(24857851-24857907)
[»] chr2 (4 HSPs)
chr2 (146-204)||(30359672-30359730)
chr2 (128-178)||(32106566-32106616)
chr2 (128-203)||(12994376-12994452)
chr2 (39-86)||(28669025-28669070)
[»] chr3 (5 HSPs)
chr3 (128-188)||(3054994-3055054)
chr3 (129-183)||(18316519-18316573)
chr3 (130-183)||(42799768-42799821)
chr3 (153-204)||(16900680-16900732)
chr3 (128-204)||(42430335-42430409)
[»] chr6 (2 HSPs)
chr6 (126-204)||(28028528-28028606)
chr6 (128-204)||(33549104-33549181)
[»] scaffold0258 (1 HSPs)
scaffold0258 (127-204)||(15322-15400)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 30768855 - 30769161
Alignment:
Q  1 tctggctttaaatggatctctgctagtggataatggagttggtcccctcggatattagtcggtttttagatcggataccgagtttttnnnnnnngttata 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||       ||||||    
T  30768855 tctggctttaaatggatatctgctagtggataatggagttggtccccccggatattagtcgattttttggtcggataccgagtttttaaaaaaagttata 30768954  T
Q  101 atatgggacgtagattaatttgtgctcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  30768955 atatgggacgtagattaatttgtgctcaacccacttgaattggtcaggtggagttgacttgggaccttggagtgtacttctcatcaaggtcgcagttcga 30769054  T
Q  201 ttctagggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaagggtttgtttgattgttttctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769055 ttctagggtttgtttgattttttctcacaggtttattttatactccaagtacttttatgcttaattttcttcttctaagggtttgtttgattgttttctc 30769154  T
Q  301 acaggtt 307  Q
    |||||||    
T  30769155 acaggtt 30769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 29195095 - 29195171
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattct 204  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||| |||||||||| |||||||||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctc-tcaaggtcgcaagttcgattct 29195171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 5795485 - 5795422
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  |||||||||||| |||||||||| |||||||||| |||| ||| ||||||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctcctcaaggtc 5795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 46295109 - 46295174
Alignment:
Q  140 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    |||||||||| | |||| |||||||| |||||||||||| ||| |||||||| || ||||||||||    
T  46295109 ttggtctggtagtgttggcttgggacattggagtgtgctcctcctcaaggtctcaggttcgattct 46295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 32992637 - 32992689
Alignment:
Q  153 gttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattct 204  Q
    |||| ||||||||||||||||||||| ||| |||||||| | |||||||||||    
T  32992637 gttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattct 32992689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 39030177 - 39030133
Alignment:
Q  140 ttggtctggtggagttgacttgggaccttggagtgtgcttctctt 184  Q
    |||| ||||||| |||| ||||||||||||||||||||| |||||    
T  39030177 ttggcctggtggtgttggcttgggaccttggagtgtgctcctctt 39030133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 26688863 - 26688928
Alignment:
Q  126 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  26688863 tcaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtc 26688928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 11793597 - 11793534
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  ||||||| |||| |||  ||||||||||||||||||||| ||| ||||||||    
T  11793597 aacccacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtc 11793534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 11979252 - 11979315
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  ||||| ||| || ||||||||||||||||| |||||||||||  ||||||||    
T  11979252 aacccacttgggttggtttggcggtgttgacttgggaccttgaagtgtgcttcttctcaaggtc 11979315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 22269009 - 22268959
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 178  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 22268959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 968362 - 968439
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    ||||||||||| |||| |||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 968439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 22760863 - 22760940
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    ||||||||||  ||||||||||||  |||||||||||||| |||||||||| ||| |||||||| || ||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattct 22760940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 7801180 - 7801243
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  |||| |||||||  |||||||||||||| |||||||||| ||||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtc 7801243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 48125250 - 48125200
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 178  Q
    ||||||||||  |||||||||||| |||| |||||||||||||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgct 48125200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 5273666 - 5273603
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  |||| ||||||| |||| ||||||||||| ||||||||| ||| ||||||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtc 5273603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 5579310 - 5579247
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||  |||  ||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  5579310 aacccacttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtc 5579247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 46279031 - 46279069
Alignment:
Q  145 ctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  46279031 ctggtggagttgactttggaccttggagtgtgctcctct 46279069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 3968700 - 3968655
Alignment:
Q  146 tggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    |||||| |||||||||||||||| ||||||||| ||| ||||||||    
T  3968700 tggtggtgttgacttgggaccttcgagtgtgctcctcctcaaggtc 3968655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 31835190 - 31835255
Alignment:
Q  126 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    ||||||||||||  |||| ||||||| |||| ||||||  ||||||||||||| ||| ||||||||    
T  31835190 tcaacccacttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtc 31835255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 654750 - 654705
Alignment:
Q  39 ttggtcccctcggatattagtcggtttttagatcggataccgagtttt 86  Q
    |||||||||||||||  ||||||||| || ||||||||||||||||||    
T  654750 ttggtcccctcggat--tagtcggttcttggatcggataccgagtttt 654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 16773807 - 16773884
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    ||||||||||| ||||||||||||  |||||||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 16773884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 19373238 - 19373294
Alignment:
Q  127 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    |||||||||||| |||| ||||||| |||| |||| |||||||||||||||| ||||    
T  19373238 caacccacttgagttggcctggtggtgttggcttgagaccttggagtgtgctactct 19373294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 1410723 - 1410659
Alignment:
Q  140 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 204  Q
    ||||||||||||  |||||||||||  | |||||||||| ||| || ||||| ||||||||||||    
T  1410723 ttggtctggtggtattgacttgggatatgggagtgtgctcctcctcgaggtctcagttcgattct 1410659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 37397806 - 37397838
Alignment:
Q  55 ttagtcggtttttagatcggataccgagttttt 87  Q
    ||||||| |||||||||||||||||||||||||    
T  37397806 ttagtcgatttttagatcggataccgagttttt 37397838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 39229239 - 39229207
Alignment:
Q  54 attagtcggtttttagatcggataccgagtttt 86  Q
    |||||||||||||||||||||||| ||||||||    
T  39229239 attagtcggtttttagatcggatatcgagtttt 39229207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 952510 - 952561
Alignment:
Q  127 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 178  Q
    |||||||||||| |||||||||||| |||| |||||||||| ||||||||||    
T  952510 caacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgct 952561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 4824983 - 4825034
Alignment:
Q  140 ttggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    |||||||| ||| |||| ||||||||||||||||||||| ||||||||||||    
T  4824983 ttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtc 4825034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 37046985 - 37047040
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||||| ||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctct 37047040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 34228874 - 34228922
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtg 176  Q
    ||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  34228874 aacccacttgagttggtctggtggtgttggcttgggacctcggagtgtg 34228922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 15581217 - 15581162
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||||    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 15581162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 1690153 - 1690108
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagt 173  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  1690153 aacccacttgaattggtctggtggtattggcttgggacctgggagt 1690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 19940949 - 19940885
Alignment:
Q  127 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtc 191  Q
    |||||||||||  |||||||||||| |||  |||||| |||||||||||||| ||| | ||||||    
T  19940949 caacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtc 19940885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 24857907 - 24857851
Alignment:
Q  127 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    |||||||||||  |||| ||||||| |||| || |||||||||||||| ||||||||    
T  24857907 caacccacttgggttggcctggtggtgttggctagggaccttggagtgggcttctct 24857851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 30359672 - 30359730
Alignment:
Q  146 tggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 204  Q
    |||||| |||| ||||||||||||||||||||| ||| |||||||| || |||||||||    
T  30359672 tggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcatttcgattct 30359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 32106566 - 32106616
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgct 178  Q
    ||||||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttgggaccttggagtgtgct 32106616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 12994452 - 12994376
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgc-agttcgattc 203  Q
    ||||| ||||| ||||||| ||||  |||||||||||||| |||||||||| ||| | |||||| | ||||||||||    
T  12994452 aacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaagttcgattc 12994376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 28669025 - 28669070
Alignment:
Q  39 ttggtcccctcggatattagtcggtttttagatcggataccgagtttt 86  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  28669025 ttggtcccctcggat--tagtcgatttttggatcggataccgagtttt 28669070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 3054994 - 3055054
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaag 188  Q
    ||||||||||  |||| ||||||| |||| ||||||||||||||| ||||||||| |||||    
T  3054994 aacccacttgggttggcctggtggtgttggcttgggaccttggagcgtgcttctcctcaag 3055054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 18316573 - 18316519
Alignment:
Q  129 acccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    |||||||||  |||||||||||| | || ||||||||||||||||||||| ||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctct 18316519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 42799821 - 42799768
Alignment:
Q  130 cccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctct 183  Q
    ||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 42799768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 16900732 - 16900680
Alignment:
Q  153 gttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    |||| ||||||||||||||||||||| ||| |||||||| || ||||||||||    
T  16900732 gttggcttgggaccttggagtgtgctcctcgtcaaggtctcatgttcgattct 16900680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 42430335 - 42430409
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgcagttcgattct 204  Q
    ||||||||||  |||| |||||||  ||||||||||| ||||||||||||| ||| ||||||||  |||||||||||    
T  42430335 aacccacttgggttgg-ctggtggtattgacttgggatcttggagtgtgctcctc-tcaaggtcttagttcgattct 42430409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 28028528 - 28028606
Alignment:
Q  126 tcaacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    ||||||||||||  |||| ||||||| |||||||||||||||| ||||| ||| ||| |||||||| || ||||||||||    
T  28028528 tcaacccacttgggttggcctggtggtgttgacttgggacctttgagtgagctcctc-tcaaggtctcatgttcgattct 28028606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 33549104 - 33549181
Alignment:
Q  128 aacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    ||||||||||  ||||||||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 33549181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 15400 - 15322
Alignment:
Q  127 caacccacttgaattggtctggtggagttgacttgggaccttggagtgtgcttctcttcaaggtcgca-gttcgattct 204  Q
    |||||||||||  ||||||||||||  ||| |||||||||| |||||||||| ||| || ||||| || ||||||||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattct 15322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University