View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_high_16 (Length: 306)

Name: NF14389_high_16
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_high_16
NF14389_high_16
[»] chr4 (18 HSPs)
chr4 (1-287)||(27523786-27524073)
chr4 (1-287)||(27476158-27476444)
chr4 (9-287)||(27468928-27469206)
chr4 (21-287)||(27489394-27489660)
chr4 (1-287)||(27514156-27514442)
chr4 (21-287)||(27508202-27508457)
chr4 (1-93)||(27526495-27526587)
chr4 (6-93)||(27473557-27473644)
chr4 (5-93)||(27466484-27466572)
chr4 (1-93)||(27498076-27498168)
chr4 (5-93)||(27516991-27517079)
chr4 (195-287)||(27556989-27557081)
chr4 (212-287)||(27503399-27503474)
chr4 (195-287)||(27497878-27497971)
chr4 (5-89)||(27500718-27500802)
chr4 (17-93)||(27503196-27503272)
chr4 (6-92)||(27557154-27557242)
chr4 (3-53)||(27431550-27431600)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27523786 - 27524073
Alignment:
Q  1 aacagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatg 100  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| || | |||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  27523786 aacagtcgacaactacaatggtcaatgaaggaggaccatgagaatttaatcatggccagacaagagcatatgaaagatcacatggtgttgtctctaaatg 27523885  T
Q  101 aatggatatacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattac-aaccacagacatg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||| |||||||||||||    
T  27523886 aatggatatacttcaaatggtgtagtagatagataatgcataattcttgtgcaaaagcatcatataattgatagacttgaaagtacaaaccacagacatg 27523985  T
Q  200 tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27523986 tagaatggtttatgttgatcaattgttatccatagccatgtagacacttaccagctggacatcagcattatcataatgaagaaaacat 27524073  T

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Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 27476444 - 27476158
Alignment:
Q  1 aacagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatg 100  Q
    |||||||||||||||||||||||||| ||||||| |||| ||| || || ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  27476444 aacagtcggcaactacaatgatcaattaaggaggaccattagaatttagccatggccagacaagagcatatgaaagatcacatggtgttgtctcgaaatg 27476345  T
Q  101 aatggatatacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattacaaccacagacatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  27476344 aatggatatacttcaaatggtgtagtagatagataatgcataattcttgagcagaagcatcatataattgatagacttgaaagtacaaccacagacatgt 27476245  T
Q  201 agaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    |||||||||| |||||||| ||||||||||||  || |  |||||| ||||||||  ||||| ||||||||||||||||||||||||    
T  27476244 agaatggtttatgttgatctattgttatccatgtccttagagtcacataccagcttcacatcggcattatcataatgaagaaaacat 27476158  T

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Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 27469206 - 27468928
Alignment:
Q  9 gcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatgaatggata 108  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27469206 gcaactacaatgatcaatgaaggagggccatgagatatgagtcatggccagacaagagcatatgaaagatcacatggtgttgtctctaaatgaatggata 27469107  T
Q  109 tacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattacaaccacagacatgtagaatggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| || |||| |||||||| || ||||||||||||||||||||||    
T  27469106 tacttcaaatggtgtagtagatagataatgcataattcttgagtagaagcatcatatgatagatagacttgaaagtagaaccacagacatgtagaatggt 27469007  T
Q  209 ttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    ||  ||||||| |||||||||||| ||| | ||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  27469006 ttgagttgatctattgttatccatggccttatagtcacttaccagcttcacatcggcattatcataatgaagaaaacat 27468928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 27489394 - 27489660
Alignment:
Q  21 atcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatgaatggatatacttcaaatgg 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489394 atcagtgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatgaatggatatacttcaaatgg 27489493  T
Q  121 tgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattacaaccacagacatgtagaatggtttctgttgatca 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||  | || |||||     
T  27489494 tgtagtagatagataatgcataattcttgtgcagaagcatcatataattgatagacttgaaagtacaaccacagacatgtagaatggcctatgatgatcc 27489593  T
Q  221 attgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    ||  |||| ||| ||| | || ||||| ||||||||||||||  |||| ||||||||||||||||||    
T  27489594 ataattatacattgccttataatcactaaccagctggacatcgacattttcataatgaagaaaacat 27489660  T

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Target: chr4; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27514156 - 27514442
Alignment:
Q  1 aacagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatg 100  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||||||  |||  |||||||||||||||||||||||||||||||||||||| | |||    
T  27514156 aacagtcggcagctacaatgatcaatgaaggagggccatgaggtttgagctatggccagacaagagcatatgaaagatcacatggtgttgtctctagatg 27514255  T
Q  101 aatggatatacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattacaaccacagacatgt 200  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| || | ||||| |||| |    
T  27514256 aatggataaacttcaagtgttgtagtagatagataatgcataattcttgagcataagcatcatataattgatagacttgaaagtaaagccacaaacatat 27514355  T
Q  201 agaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    |||||||||| ||||| |  ||||||||| || ||  | ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  27514356 agaatggtttatgttgttatattgttatctatggcattatagtcacttactagctggacatcagcattatcataatgcagaaaacat 27514442  T

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Target: chr4; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 27508202 - 27508457
Alignment:
Q  21 atcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtctcgaaatgaatggatatacttcaaatgg 120  Q
    |||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||||| |||||||            | | |||||||  |     
T  27508202 atcaatgaaggagggccataagatatgagtcatgcccagacaagggcatatgaaagatcacatggagttgtctt-----------agagacttcaagcgt 27508290  T
Q  121 tgtagtagatagataatgcataattcttgtgcagaagcgtcatataattgataaacttgaaattacaaccacagacatgtagaatggtttctgttgatca 220  Q
    | | |||| |||||||||||||||||||| | |||||| |||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||||     
T  27508291 tatggtagctagataatgcataattcttgagaagaagcatcatataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatct 27508390  T
Q  221 attgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    ||||||||| || ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27508391 attgttatctatggccttatagtcacttactagctggacatcagcattgtcataatgaagaaaacat 27508457  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27526495 - 27526587
Alignment:
Q  1 aacagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  27526495 aacagtcggcaactatagtgatcagtgaaggagggccataagatttgagtcatggttagacaagagcatatgaatgatcacatggtgttgtct 27526587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 27473644 - 27473557
Alignment:
Q  6 tcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    |||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27473644 tcggcaactataatgatcagtgaatgagggccataatatttgagtcatgttcagacaagagcatatgaaacatcacatggtgttgtct 27473557  T

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Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 27466572 - 27466484
Alignment:
Q  5 gtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    ||||||||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  27466572 gtcggcaactataatgctcagtgaatgagggccataagatttgagtcatggtcagacaagagcatatgaaacatcacatggtgttgtct 27466484  T

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Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27498168 - 27498076
Alignment:
Q  1 aacagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    |||||||||||||||   |||||| |||||||||||||||||||||||||| || | |||||| ||||||||||  |||||||||||||||||    
T  27498168 aacagtcggcaactattgtgatcagtgaaggagggccataagatttgagtcgtggttagacaaaagcatatgaataatcacatggtgttgtct 27498076  T

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Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 27516991 - 27517079
Alignment:
Q  5 gtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    ||||||||||| |||||||| ||||||||| ||||| |||| |||| |||||||||||| |||||||||||  ||||||||||||||||    
T  27516991 gtcggcaactataatgatcagtgaaggaggaccataggattagagttatgttcagacaacagcatatgaaacgtcacatggtgttgtct 27517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 27557081 - 27556989
Alignment:
Q  195 acatgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    |||||||||||||||| |||||||| |||||||||||| ||  | || |||||||||||||||| |||| || ||||||||||||||||||||    
T  27557081 acatgtagaatggtttatgttgatctattgttatccattgcgttataatcacttaccagctggaaatcaacactatcataatgaagaaaacat 27556989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 27503399 - 27503474
Alignment:
Q  212 tgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    |||||||| |||||||||||| ||| | |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  27503399 tgttgatctattgttatccattgccttatagtcacttatcagctggacatcaacattatcataatgaagaaaacat 27503474  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 27497971 - 27497878
Alignment:
Q  195 acatgtagaatggtttctgttgatcaattgttatccatagccatgtag-tcacttaccagctggacatcagcattatcataatgaagaaaacat 287  Q
    |||||||||||||||| |||||||| |||||||||||  ||| | ||  ||||||||||||| ||||||| |||||||||||||||||||||||    
T  27497971 acatgtagaatggtttatgttgatctattgttatccactgccttatatctcacttaccagctagacatcaacattatcataatgaagaaaacat 27497878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 27500718 - 27500802
Alignment:
Q  5 gtcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgtt 89  Q
    ||||||||||| |||||||| ||||||||| ||||| |||| |||||||||| |||||||| || |||||| |||||||||||||    
T  27500718 gtcggcaactataatgatcagtgaaggaggaccataggattagagtcatgtttagacaagatcaaatgaaacatcacatggtgtt 27500802  T

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Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 27503196 - 27503272
Alignment:
Q  17 aatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaaagatcacatggtgttgtct 93  Q
    |||||||| |||| |||||||||||||  ||| |||||  |||||||| ||||||||||||||||||||||||||||    
T  27503196 aatgatcattgaatgagggccataagaaatgattcatggccagacaagggcatatgaaagatcacatggtgttgtct 27503272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 27557242 - 27557154
Alignment:
Q  6 tcggcaactacaatgatcaatgaaggagggccataagatttgagtcatgttcagacaagagcatatgaa--agatcacatggtgttgtc 92  Q
    |||||||||||||||||   | ||||| |||||| | |||||||| |||  ||||||||||||||||||  ||||||||||||||||||    
T  27557242 tcggcaactacaatgatttgtaaaggaaggccatgaaatttgagttatggccagacaagagcatatgaatcagatcacatggtgttgtc 27557154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 27431550 - 27431600
Alignment:
Q  3 cagtcggcaactacaatgatcaatgaaggagggccataagatttgagtcat 53  Q
    ||||||||||||  |||||||| ||||||||| |||| |||||||||||||    
T  27431550 cagtcggcaacttgaatgatcagtgaaggaggaccatgagatttgagtcat 27431600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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