View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_high_18 (Length: 278)

Name: NF14389_high_18
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_high_18
NF14389_high_18
[»] chr7 (2 HSPs)
chr7 (1-263)||(6610854-6611110)
chr7 (113-250)||(17292620-17292754)
[»] chr8 (9 HSPs)
chr8 (91-263)||(26089171-26089343)
chr8 (99-263)||(30648837-30648998)
chr8 (95-249)||(14727705-14727856)
chr8 (100-243)||(27714295-27714435)
chr8 (110-250)||(15329815-15329952)
chr8 (110-250)||(15510184-15510321)
chr8 (146-263)||(29552787-29552901)
chr8 (110-250)||(28865909-28866046)
chr8 (173-263)||(28693137-28693225)
[»] chr3 (1 HSPs)
chr3 (99-250)||(4819862-4820010)
[»] chr1 (1 HSPs)
chr1 (95-250)||(26086401-26086553)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 6611110 - 6610854
Alignment:
Q  1 acctagcttagaagtcactcatgctcccacacatgcacttgcacataagttcaggattggacgtagacagtctaagttcagaattagagcaaatatgaca 100  Q
    ||||||||||||||||||||||  ||||||||      ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6611110 acctagcttagaagtcactcataatcccacac------ttgcacataggttcaggattggacgtagacggtctaagttcagaattagagcaaatatgaca 6611017  T
Q  101 gaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6611016 gaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagtg 6610917  T
Q  201 ctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttctgctccaggaaatg 263  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  6610916 ttggtgatgacaatggtgtgaacatcacttcctcaaattctactatttctactccagaaaatg 6610854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 17292754 - 17292620
Alignment:
Q  113 aacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgatgaca 212  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||||    | | ||||  ||||||  |||||||||||||| || |   |||||    
T  17292754 aacacttggttgataattgcgactcttgttgcaacagccacctatcaatcaacgctaactcccgttggtggtgtttatcaggttagtactag---tgaca 17292658  T
Q  213 atggtgtgaacatcacttcctcaaattctactatttct 250  Q
    ||  |||||||| ||||||||  |||||||| ||||||    
T  17292657 ataatgtgaacaacacttccttcaattctacaatttct 17292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 26089171 - 26089343
Alignment:
Q  91 aaatatgacagaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttat 190  Q
    |||||| || |||||| | ||||||| |||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  26089171 aaatataaccgaggagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttat 26089270  T
Q  191 caggttagtgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttctgctccaggaaatg 263  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  26089271 caggttagtgctagtgatggcaatggtgtgaacatcacttcctccaattctactatttctactccaggaaatg 26089343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 263
Target Start/End: Original strand, 30648837 - 30648998
Alignment:
Q  99 cagaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttag 198  Q
    |||||||| | |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648837 cagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttag 30648936  T
Q  199 tgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttctgctccaggaaatg 263  Q
    ||||||   ||||| |     ||||||||||||||| |||| ||| |||||||| ||||||||||    
T  30648937 tgctgg---tgacactaacacgaacatcacttcctccaattttaccatttctgccccaggaaatg 30648998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 14727705 - 14727856
Alignment:
Q  95 atgacagaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 194  Q
    |||||||| ||| | || |||| |||||||||| | || |||||  ||||||||||||| || |||||||  |||||||||||||||||| ||||||||     
T  14727705 atgacagaagagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcaga 14727804  T
Q  195 ttagtgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttc 249  Q
    ||||||||||   |||||||  | |||||||||||||||| ||||||||||||||    
T  14727805 ttagtgctgg---tgacaataatttgaacatcacttcctccaattctactatttc 14727856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 27714295 - 27714435
Alignment:
Q  100 agaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 199  Q
    ||||||| | || ||||||||| ||||| |||||||||| |||||||| ||||| |||||||||| ||||| ||||  ||||||| |||||||||||| |    
T  27714295 agaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattgactcccgttggtggagtttatcaggttaat 27714394  T
Q  200 gctggtgatgacaatggtgtgaacatcacttcctcaaattctac 243  Q
    ||| |   |||||||  ||| ||||| |||||||| ||||||||    
T  27714395 gctag---tgacaataatgtcaacattacttcctctaattctac 27714435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 15329815 - 15329952
Alignment:
Q  110 cgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgatg 209  Q
    |||||| |||||||  || ||||||||||  |||||||| |||| ||  |||||    ||||||||||||||||| |||||||| |||||||||   |||    
T  15329815 cgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctg---atg 15329911  T
Q  210 acaatggtgtgaacatcacttcctcaaattctactatttct 250  Q
    |||||  | |||||||||||||||| |||||||||||||||    
T  15329912 acaataatttgaacatcacttcctccaattctactatttct 15329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 15510184 - 15510321
Alignment:
Q  110 cgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgatg 209  Q
    |||||| |||||||  || ||||||||||  |||||||| |||| ||  |||||    ||||||||||||||||| |||||||| |||||||||   |||    
T  15510184 cgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctg---atg 15510280  T
Q  210 acaatggtgtgaacatcacttcctcaaattctactatttct 250  Q
    |||||  | |||||||||||||||| |||||||||||||||    
T  15510281 acaataatttgaacatcacttcctccaattctactatttct 15510321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 29552787 - 29552901
Alignment:
Q  146 actgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgatgacaatggtgtgaacatcacttcctcaaattctacta 245  Q
    ||||||| ||||||||||| | | ||||||||||||||| |||||||||||| |||| |   ||||||   | |||||||||||||||| ||||||||||    
T  29552787 actgccacctatcaatcagtactaagtccccctggtggagtttatcaggttaatgctag---tgacaaaaatttgaacatcacttcctccaattctacta 29552883  T
Q  246 tttctgctccaggaaatg 263  Q
    ||||| | | ||||||||    
T  29552884 tttctaccctaggaaatg 29552901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 28865909 - 28866046
Alignment:
Q  110 cgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgatg 209  Q
    ||||||||||||||  || ||||||||||  |||||||| |||| |   |||||    ||||||||||||||||| |||||||| ||||| |||   |||    
T  28865909 cgtaacacttggttagtagttgcgactcttattgcaactaccatgttcgaatcaactctgagtccccctggtggattttatcagattagttctg---atg 28866005  T
Q  210 acaatggtgtgaacatcacttcctcaaattctactatttct 250  Q
    |||||  | |||||||||||||||| |||||||||||||||    
T  28866006 acaataatttgaacatcacttcctccaattctactatttct 28866046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 28693225 - 28693137
Alignment:
Q  173 ccccctggtggaatttatcaggtt-agtgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttctgctccaggaaatg 263  Q
    ||||||||||||||||||||| || |||||||||||   || |  | ||||||||||||||||||| |||||||||||| | |||| |||||    
T  28693225 ccccctggtggaatttatcagatttagtgctggtga---cagtaatttgaacatcacttcctcaaactctactatttctaccccagcaaatg 28693137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 4819862 - 4820010
Alignment:
Q  99 cagaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttag 198  Q
    |||||||| | || ||||||||||||||| |||||||||| ||||||||||||| || |||||||| | ||  ||| || |||||| ||||||||||||     
T  4819862 cagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcaggttaa 4819961  T
Q  199 tgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttct 250  Q
    |||| |   ||||| | || |||||||||| ||| | |||||||||||||||    
T  4819962 tgctag---tgacagtagtttgaacatcacgtccaccaattctactatttct 4820010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 26086553 - 26086401
Alignment:
Q  95 atgacagaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 194  Q
    |||||||||||| | || |||| |||||| ||| | ||  ||||  |||| ||| |||| ||| ||||||   ||| ||||||||||||| |||||| |     
T  26086553 atgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccga 26086454  T
Q  195 ttagtgctggtgatgacaatggtgtgaacatcacttcctcaaattctactatttct 250  Q
     |||||| |||||   |||| || |||||||||||||||| |||||||||||||||    
T  26086453 gtagtgccggtga---caatagtttgaacatcacttcctccaattctactatttct 26086401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University