View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14389_high_19 (Length: 277)
Name: NF14389_high_19
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 55208304 - 55208037
Alignment:
| Q |
1 |
ttgtttgtggctggcaatgacttgaaagaacatgattttgaatgaagaaaaataggagta-ctgaaatggaaatatgattttcttcctaatttatagtgt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55208304 |
ttgtttgtggctggcaatgacttgaaagaacatgattttgaatgaagaaaaataggagtaactgaaatggaaatatgattttgttcctaatttatagtgt |
55208205 |
T |
|
| Q |
100 |
agtgtgagctttaa-gaggagtgtgtggaacgcggtaaacaccaaacaataaaccacatgcagattttgtgactcaaaaatcggtcagaggcatttgttt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55208204 |
agtgtgagctttaaagaggagtgtgtggaacgcggtaaacaccaaacaataaaccac-tgcagattttgtgactcaaaaatcggtcagaggcatttgttt |
55208106 |
T |
|
| Q |
199 |
gtttggttatactatgatgaatgaatgaatcaattcaatgaatttagatttccaagtgcatgatctgtg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55208105 |
gtttggttatactatgatgaatgaatgaatcaattcaatgaatttagatttccaagtgcatgatctgtg |
55208037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University