View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_high_2 (Length: 599)
Name: NF14389_high_2
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 22 - 589
Target Start/End: Complemental strand, 22384980 - 22384413
Alignment:
| Q |
22 |
ggttttccatcaaactcataaatcccccaatgcctctcaaagttgcctggagcaacacttttatcattctcatcaacgagactgaatagataaaaatcca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22384980 |
ggttttccatcaaactcataaatcccccaatgcctctcaaagttgcctggagcaacacttttatcattctcatcaatgagactgaatagataaaaatcca |
22384881 |
T |
|
| Q |
122 |
tcatgccttttctctttggtgtaccattaccactcagagcatgtttaatgaaaccttggttgaacctctttgcatttttggcattagcattcttatcacc |
221 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384880 |
tcatgccttttctctttggtgtaccattacctctcagagcatgtttaatgaaaccttggttgaacctctttgcatttttggcattagcattcttatcacc |
22384781 |
T |
|
| Q |
222 |
atctgttggccacccaacttcaccaactgtaacatgcaagtcaggataacctgctttttctaaagcccacataagggtatccagatttgcatcaaacaca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384780 |
atctgttggccacccaacttcaccaactgtaacatgcaagtcaggataacctgctttttctaaagcccacataagggtatccagatttgcatcaaacaca |
22384681 |
T |
|
| Q |
322 |
ttgttgtaaactgcttttccgtctcgaagtggttcattctttccatcaaaaaatgcaaaatcaaacgggaaattatcttgtccatagtaaaggctaagga |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384680 |
ttgttgtaaactgcttttccgtctcgaagtggttcattctttccatcaaaaaatgcaaaatcaaacgggaaattatcttgtccatagtaaaggctaagga |
22384581 |
T |
|
| Q |
422 |
aagggtagatattaaccgtaaaagttgagttggttgaatatagaaactggattatttcaatagtgatgtctcttaattcaggtctgaagtcacctgcaga |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384580 |
aagggtagatattaaccgtaaaagttgagttggttgaatatagaaactggactatttcaatagtgatgtctcttaattcaggtctgaagtcacctgcaga |
22384481 |
T |
|
| Q |
522 |
tggcactggatttgagtctggtgaataataaatgtcagcattaaatggaacagttactttgacctttg |
589 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22384480 |
tggcactggatttgagtctggtgaatagtaaatgtcagcattaaatggaacagttactttgacctttg |
22384413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 46353656 - 46353355
Alignment:
| Q |
22 |
ggttttccatcaaactcataaatcccccaatgcctctcaaagttgcctggagcaacacttttatcattctcatcaacgagactgaatagataaaaatcca |
121 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||||||||| ||||||| ||||||| |||| ||||||| | |||||||| ||| | || | |
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| T |
46353656 |
ggttttccatcaaactcaaaaattccccaatgtctctcaaagttgccaggagcaatacttttagcattttcatcaattaaactgaataaatagatgtcaa |
46353557 |
T |
|
| Q |
122 |
tcatgccttttctctttggtgtaccattaccactcagagcatgtttaatgaaaccttggttgaacctctttgcatttttggcattagcattcttatcacc |
221 |
Q |
| |
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| || || || || |||||||||||||| ||||| | | |||||| | ||||| | ||||||||| |||||||||| ||| ||||| |||||||| |
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| T |
46353556 |
ttatacccttcctttttggtgtaccatttccacttaaacaatgtttgagtaaaccattgttgaacctttttgcattttgaatatttgcatttttatcacc |
46353457 |
T |
|
| Q |
222 |
atctgttggccacccaacttcaccaactgtaacatgcaagtcaggataacctgctttttctaaagcccacataagggtatccagatttgcatcaaacaca |
321 |
Q |
| |
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|||||||||||| |||||||| |||| | ||||||||| || ||||| |||||||| |||||||| | | ||| ||||| |||||||||||||| ||| |
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| T |
46353456 |
atctgttggccaaccaacttctccaattataacatgcatatctggataccctgctttctctaaagcatataaaagtgtatcaagatttgcatcaaaaaca |
46353357 |
T |
|
| Q |
322 |
tt |
323 |
Q |
| |
|
|| |
|
|
| T |
46353356 |
tt |
46353355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 10251468 - 10251508
Alignment:
| Q |
208 |
gcattcttatcaccatctgttggccacccaacttcaccaac |
248 |
Q |
| |
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||||| || |||||||||||||||||||| ||||||||||| |
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| T |
10251468 |
gcatttttgtcaccatctgttggccaccctacttcaccaac |
10251508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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