View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_high_20 (Length: 269)
Name: NF14389_high_20
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_high_20 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 47918 - 47661
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47918 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
47819 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47818 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
47719 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47718 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
47661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 60457 - 60200
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
60457 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
60358 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60357 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
60258 |
T |
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| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60257 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
60200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 72576 - 72319
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
72576 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
72477 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72476 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
72377 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72376 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
72319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 18691267 - 18691010
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18691267 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
18691168 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691167 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
18691068 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691067 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
18691010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 15699006 - 15698749
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15699006 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
15698907 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15698906 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
15698807 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
15698806 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15698749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 15711545 - 15711288
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15711545 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
15711446 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15711445 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
15711346 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711345 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15711288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 15724023 - 15723766
Alignment:
| Q |
1 |
tatgtcatcgcaatggcacccgtcggtgctgctgctaccctttgagtactcttggtattcattgatgagctttttgatcgattttttcgccttggtactc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15724023 |
tatgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactc |
15723924 |
T |
|
| Q |
101 |
catgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15723923 |
catgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgcca |
15723824 |
T |
|
| Q |
201 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15723823 |
cttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15723766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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