View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_high_4 (Length: 548)
Name: NF14389_high_4
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Original strand, 30768363 - 30768878
Alignment:
| Q |
20 |
gaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacga |
119 |
Q |
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| T |
30768363 |
gaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacga |
30768462 |
T |
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| Q |
120 |
tcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30768463 |
tcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttct |
30768562 |
T |
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| Q |
220 |
atggaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccgg |
319 |
Q |
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| T |
30768563 |
atgaaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccgg |
30768662 |
T |
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| Q |
320 |
aaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgt |
419 |
Q |
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| T |
30768663 |
aaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgt |
30768762 |
T |
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| Q |
420 |
gccctttgaaatcctacttctttttaggacaaaagttacgaattgttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctt |
519 |
Q |
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| T |
30768763 |
gccctttgaagtcctacttctttttaggacaaaagttatgtatttttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctt |
30768862 |
T |
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| Q |
520 |
taaatggatctctgct |
535 |
Q |
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| T |
30768863 |
taaatggatatctgct |
30768878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 39077344 - 39077495
Alignment:
| Q |
27 |
tcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttt |
126 |
Q |
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||||||||||| ||||||| || |||||||||||||| | |||||| | ||||| ||||||||||| | ||||| ||||| || || | |||||| |
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| T |
39077344 |
tcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttc |
39077443 |
T |
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| Q |
127 |
taccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
178 |
Q |
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| T |
39077444 |
tacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
327 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
377 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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